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TTYH2 (tweety family member 2)

Identity

Alias (NCBI)C17orf29
HGNC (Hugo) TTYH2
HGNC Alias symbC17orf29
HGNC Previous nametweety (Drosophila) homolog 2
 tweety homolog 2 (Drosophila)
LocusID (NCBI) 94015
Atlas_Id 42954
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74248366 and ends at 74262018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HELZ (17q24.2) / TTYH2 (17q25.1)MOG (6p22.1) / TTYH2 (17q25.1)RASSF3 (12q14.2) / TTYH2 (17q25.1)
RPL38 (17q25.1) / TTYH2 (17q25.1)TEX2 (17q23.3) / TTYH2 (17q25.1)TMEM94 (17q25.1) / TTYH2 (17q25.1)
TTYH2 (17q25.1) / DCAF5 (14q24.1)HELZ 17q24.2 / TTYH2 17q25.1KIAA0195 17q25.1 / TTYH2 17q25.1
TEX2 17q23.3 / TTYH2 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTYH2   13877
Cards
Entrez_Gene (NCBI)TTYH2    tweety family member 2
AliasesC17orf29
GeneCards (Weizmann)TTYH2
Ensembl hg19 (Hinxton)ENSG00000141540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141540 [Gene_View]  ENSG00000141540 [Sequence]  chr17:74248366-74262018 [Contig_View]  TTYH2 [Vega]
ICGC DataPortalENSG00000141540
TCGA cBioPortalTTYH2
AceView (NCBI)TTYH2
Genatlas (Paris)TTYH2
SOURCE (Princeton)TTYH2
Genetics Home Reference (NIH)TTYH2
Genomic and cartography
GoldenPath hg38 (UCSC)TTYH2  -     chr17:74248366-74262018 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTYH2  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathTTYH2 - 17q25.1 [CytoView hg19]  TTYH2 - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000141540
Genome Data Viewer NCBITTYH2 [Mapview hg19]  
OMIM608855   
Gene and transcription
Genbank (Entrez)AF319952 AK058197 AK091085 AK126955 AK296511
RefSeq transcript (Entrez)NM_001330453 NM_032646 NM_052869
Consensus coding sequences : CCDS (NCBI)TTYH2
Gene ExpressionTTYH2 [ NCBI-GEO ]   TTYH2 [ EBI - ARRAY_EXPRESS ]   TTYH2 [ SEEK ]   TTYH2 [ MEM ]
Gene Expression Viewer (FireBrowse)TTYH2 [ Firebrowse - Broad ]
GenevisibleExpression of TTYH2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94015
GTEX Portal (Tissue expression)TTYH2
Human Protein AtlasENSG00000141540-TTYH2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSA4
PhosPhoSitePlusQ9BSA4
Domains : Interpro (EBI)Tweety   
Domain families : Pfam (Sanger)Tweety (PF04906)   
Domain families : Pfam (NCBI)pfam04906   
Conserved Domain (NCBI)TTYH2
SuperfamilyQ9BSA4
AlphaFold pdb e-kbQ9BSA4   
Human Protein Atlas [tissue]ENSG00000141540-TTYH2 [tissue]
HPRD16394
Protein Interaction databases
DIP (DOE-UCLA)Q9BSA4
IntAct (EBI)Q9BSA4
BioGRIDTTYH2
STRING (EMBL)TTYH2
ZODIACTTYH2
Ontologies - Pathways
QuickGOQ9BSA4
Ontology : AmiGOintracellular calcium activated chloride channel activity  protein binding  plasma membrane  chloride transport  chloride channel complex  volume-sensitive chloride channel activity  
Ontology : EGO-EBIintracellular calcium activated chloride channel activity  protein binding  plasma membrane  chloride transport  chloride channel complex  volume-sensitive chloride channel activity  
NDEx NetworkTTYH2
Atlas of Cancer Signalling NetworkTTYH2
Wikipedia pathwaysTTYH2
Orthology - Evolution
OrthoDB94015
GeneTree (enSembl)ENSG00000141540
Phylogenetic Trees/Animal Genes : TreeFamTTYH2
Homologs : HomoloGeneTTYH2
Homology/Alignments : Family Browser (UCSC)TTYH2
Gene fusions - Rearrangements
Fusion : MitelmanHELZ/TTYH2 [17q24.2/17q25.1]  
Fusion : MitelmanKIAA0195/TTYH2 [17q25.1/17q25.1]  
Fusion : MitelmanRASSF3/TTYH2 [12q14.2/17q25.1]  
Fusion : MitelmanTEX2/TTYH2 [17q23.3/17q25.1]  
Fusion : QuiverTTYH2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTYH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTYH2
dbVarTTYH2
ClinVarTTYH2
MonarchTTYH2
1000_GenomesTTYH2 
Exome Variant ServerTTYH2
GNOMAD BrowserENSG00000141540
Varsome BrowserTTYH2
ACMGTTYH2 variants
VarityQ9BSA4
Genomic Variants (DGV)TTYH2 [DGVbeta]
DECIPHERTTYH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTYH2 
Mutations
ICGC Data PortalTTYH2 
TCGA Data PortalTTYH2 
Broad Tumor PortalTTYH2
OASIS PortalTTYH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTYH2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTYH2
Mutations and Diseases : HGMDTTYH2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTYH2
DgiDB (Drug Gene Interaction Database)TTYH2
DoCM (Curated mutations)TTYH2
CIViC (Clinical Interpretations of Variants in Cancer)TTYH2
Cancer3DTTYH2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608855   
Orphanet
DisGeNETTTYH2
MedgenTTYH2
Genetic Testing Registry TTYH2
NextProtQ9BSA4 [Medical]
GENETestsTTYH2
Target ValidationTTYH2
Huge Navigator TTYH2 [HugePedia]
ClinGenTTYH2
Clinical trials, drugs, therapy
MyCancerGenomeTTYH2
Protein Interactions : CTDTTYH2
Pharm GKB GenePA37823
PharosQ9BSA4
Clinical trialTTYH2
Miscellaneous
canSAR (ICR)TTYH2
HarmonizomeTTYH2
DataMed IndexTTYH2
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTYH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:48 CEST 2021

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