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UGT1A6 (UDP glucuronosyltransferase 1 family, polypeptide A6)

Identity

Other namesGNT1
HLUGP
HLUGP1
MGC29860
UDPGT
UGT1
UGT1A6S
UGT1F
HGNC (Hugo) UGT1A6
Location 2q37.1
Location_base_pair Starts at 234266251 and ends at 234346690 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UGT1A6   12538
Entrez_Gene (NCBI)UGT1A6  54578  UDP glucuronosyltransferase 1 family, polypeptide A6
Cards
GeneCards (Weizmann)UGT1A6
Ensembl (Hinxton)ENSG00000167165 [Gene_View]  UGT1A6 [Vega]
AceView (NCBI)UGT1A6
Genatlas (Paris)UGT1A6
euGene (Indiana)54578
SOURCE (Stanford)NM_001072 NM_205862
Gene Expression (Array Express) ENSG00000167165
Genomic and cartography
GoldenPath (UCSC)UGT1A6  -  2q37.1   chr2:234266251-234346690 +  2q37.1   [Description]    (hg18-March_2006)
EnsemblUGT1A6 - 2q37.1 [CytoView]
Mapping of homologs : NCBIUGT1A6 [Mapview]
OMIM606431   
Gene and transcription
Gene : Genbank (Entrez)AY435141 BC011409 BC019861 BE463503 BM688740
Reference sequence (RefSeq transcript) :SRSNM_001072 NM_205862
Reference transcript : EntrezNM_001072 NM_205862
RefSeq genomic : SRSAC_000045 AC_000134 NC_000002 NG_002601 NT_005120 NW_001838868 NW_921618
RefSeq genomic : EntrezAC_000045 AC_000134 NC_000002 NG_002601 NT_005120 NW_001838868 NW_921618
Consensus coding sequences : CCDS NCBIUGT1A6
Cluster EST : UnigeneHs.554822 [ SRS ] Hs.554822 [ NCBI ]
Alternative Splicing : Fast-db (Paris)16088
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP19224 (SRS) P19224 (Expasy) P19224 (Uniprot)
With graphics : InterProP19224
Splice isoforms : VarSplice FASTAP19224(VarSplice FASTA)
Domaine pattern : Prosite (SRS)UDPGT (PS00375)   
Domain pattern : Prosite (Expaxy)UDPGT (PS00375)   
Domains : Interpro (SRS)UDP_glucos_trans   
Domains : Interpro (EBI)UDP_glucos_trans   
Related proteins : CluSTrP19224
Domain families : Pfam SRSUDPGT (PF00201)   
Domain families : Pfam SangerUDPGT (PF00201)   
Domain families : Pfam NCBIpfam00201   
Blocks (Seattle)P19224
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD07071
Protein Interaction databases
DIP (DOE-UCLA)P19224
IntAct (EBI)P19224
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIUGT1A6
SNP : GeneSNP UtahUGT1A6
SNP : HGBaseUGT1A6
Genetic variants : HAPMAPUGT1A6
Somatic Mutations in Cancer : COSMICUGT1A6 
Mutations and Diseases : HGMDUGT1A6
Hereditary diseases : OMIM606431   
Hereditary diseases : GENETests606431   
Diseases : Genetic AssociationUGT1A6
General knowledge
Homologs : HomoloGeneUGT1A6
Homology/Alignments : Family Browser UCSCUGT1A6
Phylogenetic Trees/Animal Genes : TreeFamUGT1A6
Catalytic activity : Enzyme2.4.1.17 [ Enzyme-Expasy ]   2.4.1.17 [ Enzyme-SRS ]   2.4.1.17 [ IntEnz-EBI ]   2.4.1.17 [ BRENDA ]   2.4.1.17 [ KEGG ]   
Chemical/Protein Interactions : CTD54578
Keywords Ontology : AmiGOendoplasmic reticulum  microsome  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  membrane  integral to membrane  
Keywords Ontology : EGO-EBIendoplasmic reticulum  microsome  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  membrane  integral to membrane  
Pathways : BIOCARTA
Pathways : KEGGPentose and glucuronate interconversionsAndrogen and estrogen metabolismStarch and sucrose metabolismPorphyrin and chlorophyll metabolismMetabolism of xenobiotics by cytochrome P450
Other databases
Probes
Probes : ImagenesUGT1A6 Related clones (RZPD - Berlin)
Literature
PubMed72 Pubmed reference(s) in Entrez
PubGeneUGT1A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:28:21 CET 2010
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