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USP47 (ubiquitin specific peptidase 47)

Identity

Alias_namesTrf (TATA binding protein-related factor)-proximal homolog (Drosophila)
ubiquitin specific protease 47
Other aliasTRFP
HGNC (Hugo) USP47
LocusID (NCBI) 55031
Atlas_Id 51474
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 11841423 and ends at 11959325 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFAP1L1 (5q32) / USP47 (11p15.3)AKAP13 (15q25.3) / USP47 (11p15.3)RPS8 (1p34.1) / USP47 (11p15.3)
SEMA3A (7q21.11) / USP47 (11p15.3)USP47 (11p15.3) / DFNB31 (9q32)USP47 (11p15.3) / USP47 (11p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP47   20076
Cards
Entrez_Gene (NCBI)USP47  55031  ubiquitin specific peptidase 47
AliasesTRFP
GeneCards (Weizmann)USP47
Ensembl hg19 (Hinxton)ENSG00000170242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170242 [Gene_View]  ENSG00000170242 [Sequence]  chr11:11841423-11959325 [Contig_View]  USP47 [Vega]
ICGC DataPortalENSG00000170242
TCGA cBioPortalUSP47
AceView (NCBI)USP47
Genatlas (Paris)USP47
WikiGenes55031
SOURCE (Princeton)USP47
Genetics Home Reference (NIH)USP47
Genomic and cartography
GoldenPath hg38 (UCSC)USP47  -     chr11:11841423-11959325 +  11p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP47  -     11p15.3   [Description]    (hg19-Feb_2009)
GoldenPathUSP47 - 11p15.3 [CytoView hg19]  USP47 - 11p15.3 [CytoView hg38]
ImmunoBaseENSG00000170242
Mapping of homologs : NCBIUSP47 [Mapview hg19]  USP47 [Mapview hg38]
OMIM614460   
Gene and transcription
Genbank (Entrez)AF059318 AI126428 AI693144 AK000734 AK027283
RefSeq transcript (Entrez)NM_001282659 NM_001330208 NM_001372091 NM_001372092 NM_001372093 NM_001372094 NM_001372095 NM_001372096 NM_001372097 NM_001372098 NM_001372099 NM_001372100 NM_001372101 NM_001372102 NM_001372103 NM_017944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP47
Alternative Splicing GalleryENSG00000170242
Gene ExpressionUSP47 [ NCBI-GEO ]   USP47 [ EBI - ARRAY_EXPRESS ]   USP47 [ SEEK ]   USP47 [ MEM ]
Gene Expression Viewer (FireBrowse)USP47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55031
GTEX Portal (Tissue expression)USP47
Human Protein AtlasENSG00000170242-USP47 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)USP47
DMDM Disease mutations55031
Blocks (Seattle)USP47
Human Protein Atlas [tissue]ENSG00000170242-USP47 [tissue]
IPIIPI00607554   IPI00165528   IPI00607731   IPI00023584   IPI00985193   IPI00470871   
Protein Interaction databases
FunCoupENSG00000170242
BioGRIDUSP47
STRING (EMBL)USP47
ZODIACUSP47
Ontologies - Pathways
Huge Navigator USP47 [HugePedia]
snp3D : Map Gene to Disease55031
BioCentury BCIQUSP47
ClinGenUSP47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55031
Chemical/Pharm GKB GenePA134880952
Clinical trialUSP47
Miscellaneous
canSAR (ICR)USP47 (select the gene name)
DataMed IndexUSP47
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP47
EVEXUSP47
GoPubMedUSP47
iHOPUSP47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:15:57 CET 2020

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