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ZBP1 (Z-DNA binding protein 1)

Identity

Alias_namesC20orf183
chromosome 20 open reading frame 183
Alias_symbol (synonym)dJ718J7.3
DLM1
DLM-1
DAI
Other alias
HGNC (Hugo) ZBP1
LocusID (NCBI) 81030
Atlas_Id 51169
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 57603846 and ends at 57620576 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPS6KA5 (14q32.11) / ZBP1 (20q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBP1   16176
Cards
Entrez_Gene (NCBI)ZBP1  81030  Z-DNA binding protein 1
AliasesC20orf183; DAI; DLM-1; DLM1
GeneCards (Weizmann)ZBP1
Ensembl hg19 (Hinxton)ENSG00000124256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124256 [Gene_View]  chr20:57603846-57620576 [Contig_View]  ZBP1 [Vega]
ICGC DataPortalENSG00000124256
TCGA cBioPortalZBP1
AceView (NCBI)ZBP1
Genatlas (Paris)ZBP1
WikiGenes81030
SOURCE (Princeton)ZBP1
Genetics Home Reference (NIH)ZBP1
Genomic and cartography
GoldenPath hg38 (UCSC)ZBP1  -     chr20:57603846-57620576 -  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBP1  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblZBP1 - 20q13.31 [CytoView hg19]  ZBP1 - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBIZBP1 [Mapview hg19]  ZBP1 [Mapview hg38]
OMIM606750   
Gene and transcription
Genbank (Entrez)AI659939 AI925506 AJ300575 AK122761 AK128405
RefSeq transcript (Entrez)NM_001160417 NM_001160418 NM_001160419 NM_001323966 NM_030776
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBP1
Cluster EST : UnigeneHs.302123 [ NCBI ]
CGAP (NCI)Hs.302123
Alternative Splicing GalleryENSG00000124256
Gene ExpressionZBP1 [ NCBI-GEO ]   ZBP1 [ EBI - ARRAY_EXPRESS ]   ZBP1 [ SEEK ]   ZBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81030
GTEX Portal (Tissue expression)ZBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H171   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H171  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H171
Splice isoforms : SwissVarQ9H171
PhosPhoSitePlusQ9H171
Domains : Interpro (EBI)dsRNA_A_deaminase    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)z-alpha (PF02295)   
Domain families : Pfam (NCBI)pfam02295   
Domain families : Smart (EMBL)Zalpha (SM00550)  
Conserved Domain (NCBI)ZBP1
DMDM Disease mutations81030
Blocks (Seattle)ZBP1
PDB (SRS)2L4M    2LNB    3EYI    4KA4   
PDB (PDBSum)2L4M    2LNB    3EYI    4KA4   
PDB (IMB)2L4M    2LNB    3EYI    4KA4   
PDB (RSDB)2L4M    2LNB    3EYI    4KA4   
Structural Biology KnowledgeBase2L4M    2LNB    3EYI    4KA4   
SCOP (Structural Classification of Proteins)2L4M    2LNB    3EYI    4KA4   
CATH (Classification of proteins structures)2L4M    2LNB    3EYI    4KA4   
SuperfamilyQ9H171
Human Protein AtlasENSG00000124256
Peptide AtlasQ9H171
HPRD09484
IPIIPI00006512   IPI00219702   IPI00219704   IPI00334653   IPI00181608   IPI00844531   IPI00930211   IPI00843852   IPI00930657   
Protein Interaction databases
DIP (DOE-UCLA)Q9H171
IntAct (EBI)Q9H171
FunCoupENSG00000124256
BioGRIDZBP1
STRING (EMBL)ZBP1
ZODIACZBP1
Ontologies - Pathways
QuickGOQ9H171
Ontology : AmiGODNA binding  left-handed Z-DNA binding  RNA binding  double-stranded RNA adenosine deaminase activity  protein binding  nucleus  cytoplasm  cytosol  cytosol  biological_process  regulation of type I interferon production  positive regulation of type I interferon production  innate immune response  
Ontology : EGO-EBIDNA binding  left-handed Z-DNA binding  RNA binding  double-stranded RNA adenosine deaminase activity  protein binding  nucleus  cytoplasm  cytosol  cytosol  biological_process  regulation of type I interferon production  positive regulation of type I interferon production  innate immune response  
Pathways : KEGGCytosolic DNA-sensing pathway   
NDEx NetworkZBP1
Atlas of Cancer Signalling NetworkZBP1
Wikipedia pathwaysZBP1
Orthology - Evolution
OrthoDB81030
GeneTree (enSembl)ENSG00000124256
Phylogenetic Trees/Animal Genes : TreeFamZBP1
HOVERGENQ9H171
HOGENOMQ9H171
Homologs : HomoloGeneZBP1
Homology/Alignments : Family Browser (UCSC)ZBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBP1
dbVarZBP1
ClinVarZBP1
1000_GenomesZBP1 
Exome Variant ServerZBP1
ExAC (Exome Aggregation Consortium)ZBP1 (select the gene name)
Genetic variants : HAPMAP81030
Genomic Variants (DGV)ZBP1 [DGVbeta]
DECIPHERZBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBP1 
Mutations
ICGC Data PortalZBP1 
TCGA Data PortalZBP1 
Broad Tumor PortalZBP1
OASIS PortalZBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBP1
DgiDB (Drug Gene Interaction Database)ZBP1
DoCM (Curated mutations)ZBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBP1 (select a term)
intoGenZBP1
Cancer3DZBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606750   
Orphanet
MedgenZBP1
Genetic Testing Registry ZBP1
NextProtQ9H171 [Medical]
TSGene81030
GENETestsZBP1
Target ValidationZBP1
Huge Navigator ZBP1 [HugePedia]
snp3D : Map Gene to Disease81030
BioCentury BCIQZBP1
ClinGenZBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81030
Chemical/Pharm GKB GenePA38094
Clinical trialZBP1
Miscellaneous
canSAR (ICR)ZBP1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBP1
EVEXZBP1
GoPubMedZBP1
iHOPZBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:10 CEST 2017

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