Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZDHHC9 (zinc finger DHHC-type containing 9)

Identity

Alias_namesZDHHC10
CXorf11
zinc finger, DHHC-type containing 10
chromosome X open reading frame 11
Alias_symbol (synonym)ZNF379
CGI-89
ZNF380
Other aliasCGI89
DHHC9
MMSA1
MRXSZ
HGNC (Hugo) ZDHHC9
LocusID (NCBI) 51114
Atlas_Id 47719
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 128937264 and ends at 128977561 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZDHHC9 (Xq26.1) / HABP4 (9q22.32)ZDHHC9 (Xq26.1) / KRT15 (17q21.2)ZDHHC9 (Xq26.1) / ZDHHC9 (Xq26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Thyroid: Medullary carcinoma


External links

Nomenclature
HGNC (Hugo)ZDHHC9   18475
Cards
Entrez_Gene (NCBI)ZDHHC9  51114  zinc finger DHHC-type containing 9
AliasesCGI89; CXorf11; DHHC9; MMSA1; 
MRXSZ; ZDHHC10; ZNF379; ZNF380
GeneCards (Weizmann)ZDHHC9
Ensembl hg19 (Hinxton)ENSG00000188706 [Gene_View]  chrX:128937264-128977561 [Contig_View]  ZDHHC9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188706 [Gene_View]  chrX:128937264-128977561 [Contig_View]  ZDHHC9 [Vega]
ICGC DataPortalENSG00000188706
TCGA cBioPortalZDHHC9
AceView (NCBI)ZDHHC9
Genatlas (Paris)ZDHHC9
WikiGenes51114
SOURCE (Princeton)ZDHHC9
Genetics Home Reference (NIH)ZDHHC9
Genomic and cartography
GoldenPath hg19 (UCSC)ZDHHC9  -     chrX:128937264-128977561 -  Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZDHHC9  -     Xq26.1   [Description]    (hg38-Dec_2013)
EnsemblZDHHC9 - Xq26.1 [CytoView hg19]  ZDHHC9 - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIZDHHC9 [Mapview hg19]  ZDHHC9 [Mapview hg38]
OMIM300646   300799   
Gene and transcription
Genbank (Entrez)AB209807 AF151847 AK001112 AK001424 AK001524
RefSeq transcript (Entrez)NM_001008222 NM_016032
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021387 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)ZDHHC9
Cluster EST : UnigeneHs.193566 [ NCBI ]
CGAP (NCI)Hs.193566
Alternative Splicing GalleryENSG00000188706
Gene ExpressionZDHHC9 [ NCBI-GEO ]   ZDHHC9 [ EBI - ARRAY_EXPRESS ]   ZDHHC9 [ SEEK ]   ZDHHC9 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51114
GTEX Portal (Tissue expression)ZDHHC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y397   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y397  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y397
Splice isoforms : SwissVarQ9Y397
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusQ9Y397
Domaine pattern : Prosite (Expaxy)ZF_DHHC (PS50216)   
Domains : Interpro (EBI)Znf_DHHC_palmitoyltrfase   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC9
DMDM Disease mutations51114
Blocks (Seattle)ZDHHC9
SuperfamilyQ9Y397
Human Protein AtlasENSG00000188706
Peptide AtlasQ9Y397
HPRD06759
IPIIPI00219777   IPI00655637   IPI00643786   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y397
IntAct (EBI)Q9Y397
FunCoupENSG00000188706
BioGRIDZDHHC9
STRING (EMBL)ZDHHC9
ZODIACZDHHC9
Ontologies - Pathways
QuickGOQ9Y397
Ontology : AmiGOpalmitoyltransferase complex  cytoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  zinc ion binding  integral component of membrane  palmitoyltransferase activity  peptidyl-L-cysteine S-palmitoylation  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  intrinsic component of Golgi membrane  Ras palmitoyltransferase activity  
Ontology : EGO-EBIpalmitoyltransferase complex  cytoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  zinc ion binding  integral component of membrane  palmitoyltransferase activity  peptidyl-L-cysteine S-palmitoylation  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  intrinsic component of Golgi membrane  Ras palmitoyltransferase activity  
NDEx NetworkZDHHC9
Atlas of Cancer Signalling NetworkZDHHC9
Wikipedia pathwaysZDHHC9
Orthology - Evolution
OrthoDB51114
GeneTree (enSembl)ENSG00000188706
Phylogenetic Trees/Animal Genes : TreeFamZDHHC9
HOVERGENQ9Y397
HOGENOMQ9Y397
Homologs : HomoloGeneZDHHC9
Homology/Alignments : Family Browser (UCSC)ZDHHC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC9
dbVarZDHHC9
ClinVarZDHHC9
1000_GenomesZDHHC9 
Exome Variant ServerZDHHC9
ExAC (Exome Aggregation Consortium)ZDHHC9 (select the gene name)
Genetic variants : HAPMAP51114
Genomic Variants (DGV)ZDHHC9 [DGVbeta]
DECIPHER (Syndromes)X:128937264-128977561  ENSG00000188706
CONAN: Copy Number AnalysisZDHHC9 
Mutations
ICGC Data PortalZDHHC9 
TCGA Data PortalZDHHC9 
Broad Tumor PortalZDHHC9
OASIS PortalZDHHC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC9
DgiDB (Drug Gene Interaction Database)ZDHHC9
DoCM (Curated mutations)ZDHHC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC9 (select a term)
intoGenZDHHC9
Cancer3DZDHHC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300646    300799   
Orphanet972   
MedgenZDHHC9
Genetic Testing Registry ZDHHC9
NextProtQ9Y397 [Medical]
TSGene51114
GENETestsZDHHC9
Huge Navigator ZDHHC9 [HugePedia]
snp3D : Map Gene to Disease51114
BioCentury BCIQZDHHC9
ClinGenZDHHC9 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51114
Chemical/Pharm GKB GenePA38340
Clinical trialZDHHC9
Miscellaneous
canSAR (ICR)ZDHHC9 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC9
EVEXZDHHC9
GoPubMedZDHHC9
iHOPZDHHC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:25:29 CEST 2017

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