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KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog

Identity

Other namesSCFR (Stem Cell Factor Receptor)
CD117
HGNC (Hugo) KIT
Location 4q12
Location_base_pair Starts at 55524095 and ends at 55606879 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order centromere-PDGFRA -KIT-KDR-telomere
 
  KIT (4q12) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

Description spans 89 kb; 21 exons; size of intron 1 : 37,4 kb
Transcription 5,23 kb mRNA; alternative splicing of exon 9 gives rise to two isoforms, KitA and Kit, that differ by the presence or absence of four aminoacids.

Protein

Description 976 aa; 145 kDa; type III receptor tyrosine kinase; contains an extracellular domains with 5 Ig-like loops, a highly hydrophobic transmenbrane domain (23 aa), and an intracellular domain with tyrosine kinase activity split by a kinase insert (KI) in an ATP-binding region and in the phosphotransferase domain
Expression hematopoietic stem cells, mast cells, melanocytes, germ-cell lineages and ICCs (Interstitial cells of Cajal).
Localisation plasma membrane
Function SCF/MGF receptor with tyrosine kinase activity; binding of ligand (SCF) induces receptor dimerization, autophosphorylation and signal transduction via molecules containing SH2- domains.
 
Homology with CSF-1R, PDGFRb, PDGFRa, and FLT3.

Mutations

Note see diagrams: Loss-of-function mutations, and Gain-of-function mutations
 
Germinal in piebaldism, and in familial gastrointestinal stromal tumours (see below).
Somatic in aggressive mastocytosis, mast cell leukemia, ANLL with/without mast cell involvement, myeloproliferative disorders, colon carcinoma and gastrointestinal stromal tumours and germ cell tumors (GCCs)

Implicated in

Entity Piebaldism.
Disease autosomal dominant disorder of pigmentation; loss of function abnormalities of the c-kit gene have been demonstrated in 59% of the typical patients.
  
Entity Familial gastrointestinal stromal tumours and sporadic gastrointestinal stromal tumours (GISTs).
Disease GISTs are the most common mesenchymal tumors in the human digestive tract; they originate from kit-expressing cells (ICCs), and often have activating c-kit mutations clustered in the juxtamembrane domain.
  
Entity systemic mast cell disease (SMCD)
Disease mast cell hyperplasia in the bone marrow, liver, spleen, lymph nodes, gastrointestinal tract and skin; gain of function mutations are detected in most patients
Prognosis depending on the four clinical entities recognized: indolent form, form associated with hematologic disorder, aggressive SMCD and mast cell leukemia; leukemic transformation with mast cell involvement is characterized by rapid progression of disease with a survival time less than 1 year
Oncogenesis clinical features of malignant hematopoietic cell growth are influenced by the time, the location of c-kit mutative events, and the number of associated lesions.
  
Entity Core binding factor leukemias (ANLL-M2 with t(8;21) (link), (ANLL-M4Eo with inv(16))
Disease characterized by disruption and loss of CBFa2/AML1 - CBFb/PEBP2b function. Myelomonoblastic leukemia cells are marked by combined positivity for the stem cell antigens CD34, CD117 and high frequency of c-kit mutations ( see Figure on CBF leukemia and KIT mutations)
  

To be noted

loss of expression of c-KIT appears to be associated with progression of some tumors (melanoma) and autocrine/paracrine stimulation of the c-kit/SCF system may participate in human solid tumors such as lung, breast, testicular and gynecological malignancies.

External links

Nomenclature
HGNC (Hugo)KIT   6342
Entrez_Gene (NCBI)KIT  3815  v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
Cards
AtlasKITID127
GeneCards (Weizmann)KIT
Ensembl (Hinxton)ENSG00000157404 [Gene_View]  KIT [Vega]
AceView (NCBI)KIT
Genatlas (Paris)KIT
euGene (Indiana)3815
SOURCE (Stanford)NM_000222 NM_001093772
Gene Expression (Array Express) ENSG00000157404
Genomic and cartography
GoldenPath (UCSC)KIT  -  4q12   chr4:55524095-55606879 +  4q11-q12   [Description]    (hg19-Feb_2009)
EnsemblKIT - 4q11-q12 [CytoView]
Mapping of homologs : NCBIKIT [Mapview]
OMIM164920   172800   273300   601626   606764   
Gene and transcription
Gene : Genbank (Entrez)AJ438313 AK304031 BC071593 CN414753 DC376760
Reference sequence (RefSeq transcript) :SRSNM_000222 NM_001093772
Reference transcript : EntrezNM_000222 NM_001093772
RefSeq genomic : SRSAC_000047 AC_000136 NC_000004 NG_007456 NT_022853 NW_001838913 NW_922162
RefSeq genomic : EntrezAC_000047 AC_000136 NC_000004 NG_007456 NT_022853 NW_001838913 NW_922162
Consensus coding sequences : CCDS NCBIKIT
Cluster EST : UnigeneHs.479754 [ SRS ] Hs.479754 [ NCBI ]
Alternative Splicing : Fast-db (Paris)4404
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP10721 (SRS) P10721 (Expasy) P10721 (Uniprot)
With graphics : InterProP10721
Splice isoforms : VarSplice FASTAP10721(VarSplice FASTA)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)    RECEPTOR_TYR_KIN_III (PS00240)   
Domain pattern : Prosite (Expaxy)IG_LIKE (PS50835)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)    RECEPTOR_TYR_KIN_III (PS00240)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_sub    Ig_sub2    Immunoglobulin    Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser-Thr/Tyr-Pkinase    Tyr_kinase_mast_cell_GF_rcpt    Tyr_Pkinase_cat_dom    Tyr_prot_kinase    Tyr_prot_kinase_AS    Tyr_prot_kinase_CSF1/PDGF_rcpt    Tyr_prot_kinase_rcpt_3_CS   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_sub    Ig_sub2    Immunoglobulin    Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser-Thr/Tyr-Pkinase    Tyr_kinase_mast_cell_GF_rcpt    Tyr_Pkinase_cat_dom    Tyr_prot_kinase    Tyr_prot_kinase_AS    Tyr_prot_kinase_CSF1/PDGF_rcpt    Tyr_prot_kinase_rcpt_3_CS   
Related proteins : CluSTrP10721
Domain families : Pfam SRSig (PF00047)    Pkinase_Tyr (PF07714)   
Domain families : Pfam Sangerig (PF00047)    Pkinase_Tyr (PF07714)   
Domain families : Pfam NCBIpfam00047    pfam07714   
Domain families : Smart EMBLIG (SM00409)  IGc2 (SM00408)  TyrKc (SM00219)  
Blocks (Seattle)P10721
Crystal structure of protein : PDB SRS1PKG    1QZJ    1QZK    1R01    1T45    1T46    2E9W    2EC8    2VIF    3G0E    3G0F   
Crystal structure of protein : PDBSum1PKG    1QZJ    1QZK    1R01    1T45    1T46    2E9W    2EC8    2VIF    3G0E    3G0F   
Crystal structure of protein : IMB1PKG    1QZJ    1QZK    1R01    1T45    1T46    2E9W    2EC8    2VIF    3G0E    3G0F   
Crystal structure of protein : PDB RSDB1PKG    1QZJ    1QZK    1R01    1T45    1T46    2E9W    2EC8    2VIF    3G0E    3G0F   
Human Protein AtlasENSG00000157404
HPRD01287
Protein Interaction databases
DIP (DOE-UCLA)P10721
IntAct (EBI)P10721
FunCoupENSG00000157404
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIKIT
SNP : GeneSNP UtahKIT
SNP : HGBaseKIT
Genetic variants : HAPMAPKIT
Cancer Gene: CensusKIT 
Somatic Mutations in Cancer : COSMICKIT 
Mutations and Diseases : HGMDKIT
Hereditary diseases : OMIM164920    172800    273300    601626    606764   
Hereditary diseases : GENETests164920    172800    273300    601626    606764   
Diseases : Genetic AssociationKIT
General knowledge
Homologs : HomoloGeneKIT
Homology/Alignments : Family Browser UCSCKIT
Phylogenetic Trees/Animal Genes : TreeFamKIT
Catalytic activity : Enzyme2.7.10.1 [ Enzyme-Expasy ]   2.7.10.1 [ Enzyme-SRS ]   2.7.10.1 [ IntEnz-EBI ]   2.7.10.1 [ BRENDA ]   2.7.10.1 [ KEGG ]   
Chemical/Protein Interactions : CTD3815
Keywords Ontology : AmiGOnucleotide binding  acrosomal vesicle  myeloid progenitor cell differentiation  lymphoid progenitor cell differentiation  myeloid leukocyte differentiation  protein tyrosine kinase activity  receptor signaling protein tyrosine kinase activity  receptor activity  stem cell factor receptor activity  protein binding  ATP binding  extracellular space  nucleus  nucleolus  cytoplasm  plasma membrane  glycosphingolipid metabolic process  signal transduction  transmembrane receptor protein tyrosine kinase signaling pathway  protein kinase cascade  spermatogenesis  spermatid development  positive regulation of cell proliferation  visual learning  response to radiation  external side of plasma membrane  internal side of plasma membrane  positive regulation of gene expression  integral to membrane  transferase activity  peptidyl-tyrosine phosphorylation  cytokine-mediated signaling pathway  hemopoiesis  positive regulation of cell migration  positive regulation of pseudopodium assembly  somatic stem cell maintenance  germ cell programmed cell death  negative regulation of programmed cell death  positive regulation of MAP kinase activity  positive regulation of Notch signaling pathway  protein amino acid autophosphorylation  regulation of developmental pigmentation  somatic stem cell division  positive regulation of long-term neuronal synaptic plasticity  epithelial cell proliferation  
Keywords Ontology : EGO-EBInucleotide binding  acrosomal vesicle  myeloid progenitor cell differentiation  lymphoid progenitor cell differentiation  myeloid leukocyte differentiation  protein tyrosine kinase activity  receptor signaling protein tyrosine kinase activity  receptor activity  stem cell factor receptor activity  protein binding  ATP binding  extracellular space  nucleus  nucleolus  cytoplasm  plasma membrane  glycosphingolipid metabolic process  signal transduction  transmembrane receptor protein tyrosine kinase signaling pathway  protein kinase cascade  spermatogenesis  spermatid development  positive regulation of cell proliferation  visual learning  response to radiation  external side of plasma membrane  internal side of plasma membrane  positive regulation of gene expression  integral to membrane  transferase activity  peptidyl-tyrosine phosphorylation  cytokine-mediated signaling pathway  hemopoiesis  positive regulation of cell migration  positive regulation of pseudopodium assembly  somatic stem cell maintenance  germ cell programmed cell death  negative regulation of programmed cell death  positive regulation of MAP kinase activity  positive regulation of Notch signaling pathway  protein amino acid autophosphorylation  regulation of developmental pigmentation  somatic stem cell division  positive regulation of long-term neuronal synaptic plasticity  epithelial cell proliferation  
Pathways : BIOCARTARegulation of BAD phosphorylation [Genes]    Melanocyte Development and Pigmentation [Genes]   
Pathways : KEGGCytokine-cytokine receptor interactionHematopoietic cell lineage
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesKIT Related clones (RZPD - Berlin)
Literature
PubMed444 Pubmed reference(s) in Entrez
PubGeneKIT

Bibliography

Cloning and structural analysis of the human c-kit gene.
Vandenbark GR, deCastro CM, Taylor H, Dew-Knight S, Kaufman RE
Oncogene. 1992 ; 7 (7) : 1259-1266.
PMID 1377810
 
Novel mutations and deletions of the KIT (steel factor receptor) gene in human piebaldism.
Ezoe K, Holmes SA, Ho L, Bennett CP, Bolognia JL, Brueton L, Burn J, Falabella R, Gatto EM, Ishii N
American journal of human genetics. 1995 ; 56 (1) : 58-66.
PMID 7529964
 
Somatic c-KIT activating mutation in urticaria pigmentosa and aggressive mastocytosis: establishment of clonality in a human mast cell neoplasm.
Longley BJ, Tyrrell L, Lu SZ, Ma YS, Langley K, Ding TG, Duffy T, Jacobs P, Tang LH, Modlin I
Nature genetics. 1996 ; 12 (3) : 312-314.
PMID 8589724
 
Sequence analysis of two genomic regions containing the KIT and the FMS receptor tyrosine kinase genes.
Andre C, Hampe A, Lachaume P, Martin E, Wang XP, Manus V, Hu WX, Galibert F
Genomics. 1997 ; 39 (2) : 216-226.
PMID 9027509
 
Gain-of-function mutations of c-kit in human gastrointestinal stromal tumors.
Hirota S, Isozaki K, Moriyama Y, Hashimoto K, Nishida T, Ishiguro S, Kawano K, Hanada M, Kurata A, Takeda M, Muhammad Tunio G, Matsuzawa Y, Kanakura Y, Shinomura Y, Kitamura Y
Science (New York, N.Y.). 1998 ; 279 (5350) : 577-580.
PMID 9438854
 
C-kit gene abnormalities in gastrointestinal stromal tumors (tumors of interstitial cells of Cajal.
Sakurai S, Fukasawa T, Chong JM, Tanaka A, Fukayama M
Japanese journal of cancer research : Gann. 1999 ; 90 (12) : 1321-1328.
PMID 10665649
 
c-kit proto-oncogene exon 8 in-frame deletion plus insertion mutations in acute myeloid leukaemia.
Gari M, Goodeve A, Wilson G, Winship P, Langabeer S, Linch D, Vandenberghe E, Peake I, Reilly J
British journal of haematology. 1999 ; 105 (4) : 894-900.
PMID 10554798
 
Activating c-kit gene mutations in human germ cell tumors.
Tian Q, Frierson HF Jr, Krystal GW, Moskaluk CA
The American journal of pathology. 1999 ; 154 (6) : 1643-1647.
PMID 10362788
 
Activating and dominant inactivating c-KIT catalytic domain mutations in distinct clinical forms of human mastocytosis.
Longley BJ Jr, Metcalfe DD, Tharp M, Wang X, Tyrrell L, Lu SZ, Heitjan D, Ma Y
Proceedings of the National Academy of Sciences of the United States of America. 1999 ; 96 (4) : 1609-1614.
PMID 9990072
 
KIT extracellular and kinase domain mutations in gastrointestinal stromal tumors.
Lux ML, Rubin BP, Biase TL, Chen CJ, Maclure T, Demetri G, Xiao S, Singer S, Fletcher CD, Fletcher JA
The American journal of pathology. 2000 ; 156 (3) : 791-795.
PMID 10702394
 
C-kit mutations in core binding factor leukemias.
Beghini A, Peterlongo P, Ripamonti CB, Larizza L, Cairoli R, Morra E, Mecucci C
Blood. 2000 ; 95 (2) : 726-727.
PMID 10660321
 
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Contributor(s)

Written09-1998Lidia Larizza and Alessandro Beghini
Updated06-2000Lidia Larizza and Alessandro Beghini

Citation

This paper should be referenced as such :
Larizza L and Beghini A . KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog. Atlas Genet Cytogenet Oncol Haematol. September 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/KITID127.html
Larizza L and Beghini A . KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog. Atlas Genet Cytogenet Oncol Haematol. June 2000 .
URL : http://AtlasGeneticsOncology.org/Genes/KITID127.html

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indexed on : Thu Jul 15 14:47:47 CEST 2010

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