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ARHGEF12 (Rho guanine nucleotide exchange factor (GEF) 12)

Identity

Other namesLARG (Leukemia Associated Rho Guanine nucleotide exchange factor)
KIAA0382
HGNC ARHGEF12
Location 11q23
Local_order telomeric to MLL

DNA/RNA

Transcription 9501 bp mRNA; 4634 bp open reading frame

Protein

Description the gene encodes a guanine nucleotide exchange factor; 1544 amino acids; NH2- PDZ domain, Lsc homology (LH) domain, bipartite nuclear localization signal, Dbl homology (DH) domain, and a pleckstrin homology (PH) domain -COOH
Expression wide (leukocytes, spleen, prostate, testis, ovary, small intestine, colon, thymus)
Function PDZ domains are involved in protein-protein interactions in transmembrane signaling pathways; LH domains bind G proteins; nuclear localization signals are implicated in translocation of proteins from the cytoplasm to the nucleus; DH domains are responsible for the nucleotide exchange activity of guanine nucleotide exchange (GEF) toward Rho GTPases, PH domains function in membrane localization; Rho GEF are regulators of GTPases, and have oncogenic properties
Homology member of the family of Rho GEF factors, like dbl, vav, tiam, and BCR

Implicated in

Entity acute non lymphocytic leukemia (ANLL) with apparently normal cromosomes 11 --> MLL- LARG
Note poorly defined: only 1 case to date, a 38 yr old male patient with occupational exposure; M4-ANLL; CR; death unrelated to the leukemia
Cytogenetics the case was 51,XY,+8,+19,+3mar; the interstitial deletion at 11q23 resulting in MLL-LARG fusion cannot be seen at the chromosome level
Hybrid/Mutated Gene 5' MLL fused at exon 6 with the 3' end of almost the entire LARG; LARG is oriented in a 5' to 3'direction, like MLL
Abnormal Protein excludes the NH2- PDZ domain of LARG, and includes most of LARG, from the Lsc homology (LH) domain to COOH
  

External links

Nomenclature
HGNCARHGEF12   14193
Entrez_GeneARHGEF12  23365  Rho guanine nucleotide exchange factor (GEF) 12
Cards
AtlasLARGID243
GeneCardsARHGEF12
EnsemblARHGEF12 [Search_View]   ENSG00000196914 [Gene_View]
GenatlasARHGEF12
GeneLynxARHGEF12
eGenomeARHGEF12
euGene23365
Genomic and cartography
GoldenPathARHGEF12  -  11q23   chr11:119713156-119865855 +  11q23.3   [Description]    (hg18-Mar_2006)
EnsemblARHGEF12 - 11q23.3 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneARHGEF12
Gene and transcription
GenbankAB002380 [ ENTREZ ]
GenbankAF180681 [ ENTREZ ]
GenbankAL137456 [ ENTREZ ]
GenbankBC031784 [ ENTREZ ]
GenbankBC063117 [ ENTREZ ]
RefSeqNM_015313 [ SRS ]    NM_015313 [ ENTREZ ]
RefSeqAC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeqAC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeqNC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeqNT_033899 [ SRS ]    NT_033899 [ ENTREZ ]
RefSeqNW_001838042 [ SRS ]    NW_001838042 [ ENTREZ ]
RefSeqNW_925173 [ SRS ]    NW_925173 [ ENTREZ ]
AceViewARHGEF12 AceView - NCBI
UnigeneHs.24598 [ SRS ]    Hs.24598 [ NCBI ]     HS24598 [ spliceNest ]
Fast-db14588 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ9NZN5 [ SRS]    Q9NZN5 [ EXPASY ]     Q9NZN5 [ INTERPRO ]     Q9NZN5 [ UNIPROT ]
PrositePS00741 DH_1 [ SRS ]    PS00741 DH_1 [ Expasy ]
PrositePS50010 DH_2 [ SRS ]    PS50010 DH_2 [ Expasy ]
PrositePS50106 PDZ [ SRS ]    PS50106 PDZ [ Expasy ]
PrositePS50003 PH_DOMAIN [ SRS ]    PS50003 PH_DOMAIN [ Expasy ]
InterproIPR000219 DH-domain [ SRS ]    IPR000219 DH-domain [ EBI ]
InterproIPR001331 GDS_CDC24_CS [ SRS ]    IPR001331 GDS_CDC24_CS [ EBI ]
InterproIPR001478 PDZ [ SRS ]    IPR001478 PDZ [ EBI ]
InterproIPR001849 PH [ SRS ]    IPR001849 PH [ EBI ]
InterproIPR011993 PH_type [ SRS ]    IPR011993 PH_type [ EBI ]
InterproIPR015212 Regulat_G_prot_signal-like [ SRS ]    IPR015212 Regulat_G_prot_signal-like [ EBI ]
InterproIPR015721 RhoGEF_like [ SRS ]    IPR015721 RhoGEF_like [ EBI ]
CluSTrQ9NZN5
PfamPF00595 PDZ [ SRS ]    PF00595 PDZ [ Sanger ]    pfam00595 [ NCBI-CDD ]
PfamPF09128 RGS-like [ SRS ]    PF09128 RGS-like [ Sanger ]    pfam09128 [ NCBI-CDD ]
PfamPF00621 RhoGEF [ SRS ]    PF00621 RhoGEF [ Sanger ]    pfam00621 [ NCBI-CDD ]
SmartSM00228 PDZ [EMBL]
SmartSM00233 PH [EMBL]
SmartSM00325 RhoGEF [EMBL]
BlocksQ9NZN5
PDB1TXD [ SRS ]    1TXD [ PdbSum ],   1TXD [ IMB ]   1TXD [ RSDB ]
PDB1X86 [ SRS ]    1X86 [ PdbSum ],   1X86 [ IMB ]   1X86 [ RSDB ]
PDB2OMJ [ SRS ]    2OMJ [ PdbSum ],   2OMJ [ IMB ]   2OMJ [ RSDB ]
PDB2OS6 [ SRS ]    2OS6 [ PdbSum ],   2OS6 [ IMB ]   2OS6 [ RSDB ]
HPRD09207
Protein Interaction databases
DIPQ9NZN5
IntActQ9NZN5
Polymorphism : SNP, mutations, diseases
OMIM601626;604763    [ map ]   
GENECLINICS601626;604763
SNPARHGEF12 [dbSNP-NCBI]  
SNPNM_015313 [SNP-NCI]  
SNPARHGEF12 [GeneSNPs - Utah]  ARHGEF12] [HGBASE - SRS]
HAPMAPARHGEF12 [HAPMAP]  
COSMICARHGEF12 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbARHGEF12 [Translocation breakpoints In Cancer]  
HGMDARHGEF12
General knowledge
Family BrowserARHGEF12 [UCSC Family Browser]
SOURCENM_015313
SMDHs.24598
SAGEHs.24598
GOguanyl-nucleotide exchange factor activity [Amigo]  guanyl-nucleotide exchange factor activity
GORho guanyl-nucleotide exchange factor activity [Amigo]  Rho guanyl-nucleotide exchange factor activity
GOGTPase activator activity [Amigo]  GTPase activator activity
GOprotein binding [Amigo]  protein binding
GOintracellular [Amigo]  intracellular
GOcytoplasm [Amigo]  cytoplasm
GOmembrane [Amigo]  membrane
GOregulation of Rho protein signal transduction [Amigo]  regulation of Rho protein signal transduction
KEGGAxon guidance
KEGGRegulation of actin cytoskeleton
PubGeneARHGEF12
TreeFamARHGEF12
CTD23365 [Comparative ToxicoGenomics Database]
Other databases
Other databaseHUGE: A Database of Human Unidentified Gene-Encoded Large Proteins
Probes
ProbeARHGEF12 Related clones (RZPD - Berlin)
PubMed
PubMed22 Pubmed reference(s) in Entrez

Bibliography

Identification of a gene at 11q23 encoding a guanine nucleotide exchange factor: evidence for its fusion with MLL in acute myeloid leukemia.
Kourlas PJ, Strout MP, Becknell B, Veronese ML, Croce CM, Theil KS, Krahe R, Ruutu T, Knuutila S, Bloomfield CD, Caligiuri MA
Proceedings of the National Academy of Sciences of the United States of America. 2000 ; 97 (5) : 2145-2150.
PMID 10681437
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2000Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . ARHGEF12 (Rho guanine nucleotide exchange factor (GEF) 12). Atlas Genet Cytogenet Oncol Haematol. April 2000 .
URL : http://AtlasGeneticsOncology.org/Genes/LARGID243.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 29 18:41:31 2008


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