METAP2 (methionyl aminopeptidase 2)

2009-07-01   Ponniah Selvakumar , Rajendra K Sharma 

Department of Pathology, Laboratory Medicine, College of Medicine, University of Saskatchewan, Health Research Division, Saskatchewan Cancer Agency, Saskatoon, SK, S7N 4H4, Canada

Identity

HGNC
LOCATION
12q22
LOCUSID
ALIAS
MAP2,MNPEP,p67eIF2
FUSION GENES

DNA/RNA

Description

The gene spans 41237 bp on strand plus; 11 exons; coding sequence: 1437 nucleotides.

Pseudogene

No known pseudogenes.

Proteins

Description

Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides. Methionine aminopeptidases (MetAPs) are the enzymes responsible for the removal of methionine from the amino-terminus of newly synthesized proteins (Jackson and Hunter, 1970; Solbiati et al., 1999). The removal of methionine is essential for further amino terminal modifications (e.g., acetylation by N-alpha-acetyltransferase and myristoylation of glycine by N-myristoyltransferase, NMT) and for protein stability (Selvakumar et al., 2006; Selvakumar et al., 2007; Lowther et al., 2000; Bradshaw et al., 1998).

Expression

Ubiquitous expression. MetAP2 protein is highly expressed in all tissues.

Localisation

Cytoplasm.

Function

This protein function both by protecting the alpha subunit of eukaryotic initiation factor 2 from inhibitory phosphorylation and by removing the amino-terminal methionine residue from nascent protein (Jackson and Hunter, 1970; Solbiati et al., 1999). Increased expression of this gene is associated with various forms of cancer and the anti-cancer drugs fumagillin and ovalicin inhibit the protein by irreversibly binding to its active site (Selvakumar et al., 2006). This gene is a member of the methionyl aminopeptidase family and encodes a protein that binds to cobalt or manganese ions.

Homology

The human MetAP2 has DNA homology with Pan troglodytes (99.7%), Canis lupus familiaris (95%), Bos taurus (95.3%), Mus musculus (89.2%), Rattus norvegicus (89.2%), Gallus gallus (80.8%), Danio rerio (73.5%) and Arabidopsis thaliana (63.8%).
The human MetAP2 has protein homology with Pan troglodytes (100%), Canis lupus familiaris (98.1%), Bos taurus (96.6%), Mus musculus (95%), Rattus norvegicus (94.1%), Gallus gallus (87.6%), Danio rerio (82.9%), and Arabidopsis thaliana (66.2%).

Mutations

Note

No mutations have been reported for MetAP2 that cause congenital anomalies.

Implicated in

Entity name
Mesothelioma
Disease
Various reports suggested that MetAP2 plays an important role in the growth of different types of tumors. Malignant mesothelioma cells expressed higher MetAP2 mRNA levels compared to normal mesothelioma cells (Catalano et al., 2001). Transfection of mesothelioma cells with a MetAP2 anti-sense oligonucleotide revealed a time-dependent inhibition of cell survival and induced nucleosome formation. MetAP2 is a main regulator of the proliferative and apoptotic pathways in mesothelioma cells and MetAP2 inhibition may represent a potential target for therapeutic intervention in human mesothelioma (Catalano et al., 2001).
Entity name
Lymphomas
Disease
A high level of MetAP2 was reported in malignant lymphomas exclusively in B-cell lymphoma subtypes (Kanno et al., 2002).
Entity name
Colorectal adenocarcinoma
Disease
It has been reported that a high expression of MetAP2 in colorectal adenocarcinoma patients (Selvakumar et al., 2004a). Since myristoylation reaction is catalyzed by NMT, we reported that a cross-talk among the MetAP2, and NMT in HT29 cells (Selvakumar et al., 2004b). The expression of pp60c-src, MetAP2, and NMT was dependent on the cell density (Selvakumar et al., 2004b).
Entity name
Esophageal squamous carcinoma
Disease
Microarray gene expression analysis of human esophageal squamous cell carcinomas revealed that MetAP2 was down-regulated when irradiated (Bo et al., 2004).
Entity name
Hepatoma
Disease
Anti-sense of MetAP2 also induces apoptosis in rat hepatoma cells (Datta and Datta, 1999). A recent study suggested that fumagillin effectively inhibits both liver tumor growth and metastasis in rats in vivo (Sheen et al., 2005).
Entity name
Neuroblastoma
Note
The angiogenesis inhibitor TNP470, O-(chloro-acetyl-carbamoyl) fumagillol, a synthetic analogue of fumagillin, suppressed the expression of MetAP2 in human neuroblastoma and thus, MetAP2 may be an important molecular target for human neuroblastomas (Morowitz et al., 2005). The intracellular enzyme MetAP2 became such a candidate target enzyme due to its inactivation by the widely investigated anticancer agent TNP470 (Abe et al., 1994; Adams et al., 2004; Griffith et al., 1997; Hu et et al., 2006; Hu et al., 2007; Sin et al., 1997). Previously, inhibition of MetAP2 by TNP470 has been shown to activate p53 for cell-cycle arrest. In fact, the primary mouse embryonic fibroblasts were demonstrated to be sensitive to TNP470 and other MetAP2-specific inhibitors in a p53-dependent fashion. Several MetAP2 inhibitors were studied based on the inhibition of MetAP activity (Griffith et al., 1998; Antoine et al., 1994; Kusaka et al., 1994; Wang et al., 2000; Wang et al., 2003; Yeh et al., 2000; Zhang et al., 2000; Kim et al., 2004; Towbin et al., 2003).
Entity name
Various cancer
Note
MetAP2 inhibitors
It has been reported that MetAP2 could function as an oncogene (Tucker et al., 2008). Furthermore, various Src family tyrosine kinases, ADP ribosylation factors and eukaryotic transcription elongation factor-2 were substrates of MetAP2 which plays a significant role in the progression of metastasis (Tucker et al., 2008). A derivative of the natural product fumagillin, TNP470 has been shown to be safe and effective in the treatment of solid tumors in several animal studies and preclinical trials. TNP470 entered human clinical trials for the treatment of AIDS-related Kaposis sarcoma, metastatic breast cancer, androgen-independent prostate cancer, pediatric solid tumors, lymphomas, acute leukemia, advanced squamous cell cancer of the cervix, and metastatic renal carcinoma (Dezube et al., 1998; Kruger and Figg, 2000; Kudelka et al., 1997). Several MetAP2 inhibitors were studied based on the inhibition of MetAP activity (Griffith et al., 1998; Antoine et al., 1994; Kusaka et al., 1994; Wang et al., 2000; Yeh et al., 2000; Zhang et al., 2000; Kim et al., 2004). Previously, inhibition of MetAP2 by TNP470 has been shown to activate p53 for cell-cycle arrest (Yeh et al., 2000; Zhang et al., 2000).
The Src family kinases have been shown to play pivotal roles in cell-cycle progression, making them potential candidates to mediate the cell-cycle effects of MetAP inhibitors. MetAP2 plays a critical role in the proliferation of endothelial cells and certain tumor cells and thus serves as a promising target for anti-angiogenesis and anti-cancer drugs (Bo et al., 2004). The inhibition of MetAP2 expression in mesothelioma cells leads to cell death and that such apoptosis is avoided in cases where there is overexpression of Bcl-2 (Catalano et al., 2001). The upregulation of Bcl-2 in colorectal cancer is well established by various investigators (Rajala et al., 2000; Yu et al., 2003; Valassiadou et al., 1997).

Bibliography

Pubmed IDLast YearTitleAuthors
80129591994A fumagillin derivative angiogenesis inhibitor, AGM-1470, inhibits activation of cyclin-dependent kinases and phosphorylation of retinoblastoma gene product but not protein tyrosyl phosphorylation or protooncogene expression in vascular endothelial cells.Abe J et al
152101542004Synthesis and biological evaluation of novel curcumin analogs as anti-cancer and anti-angiogenesis agents.Adams BK et al
75136091994AGM-1470, a potent angiogenesis inhibitor, prevents the entry of normal but not transformed endothelial cells into the G1 phase of the cell cycle.Antoine N et al
152266082004Effect of ionizing irradiation on human esophageal cancer cell lines by cDNA microarray gene expression analysis.Bo H et al
96974171998N-terminal processing: the methionine aminopeptidase and N alpha-acetyl transferase families.Bradshaw RA et al
114859302001Methionine aminopeptidase-2 regulates human mesothelioma cell survival: role of Bcl-2 expression and telomerase activity.Catalano A et al
99257531999Induction of apoptosis due to lowering the level of eukaryotic initiation factor 2-associated protein, p67, from mammalian cells by antisense approach.Datta B et al
95520501998Fumagillin analog in the treatment of Kaposi's sarcoma: a phase I AIDS Clinical Trial Group study. AIDS Clinical Trial Group No. 215 Team.Dezube BJ et al
98609431998Molecular recognition of angiogenesis inhibitors fumagillin and ovalicin by methionine aminopeptidase 2.Griffith EC et al
171142912006Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression.Hu X et al
176563132007Regulation of c-Src nonreceptor tyrosine kinase activity by bengamide A through inhibition of methionine aminopeptidases.Hu X et al
54320611970Role of methionine in the initiation of haemoglobin synthesis.Jackson R et al
121180912002High expression of methionine aminopeptidase type 2 in germinal center B cells and their neoplastic counterparts.Kanno T et al
151263292004Depletion of methionine aminopeptidase 2 does not alter cell response to fumagillin or bengamides.Kim S et al
110607502000TNP-470: an angiogenesis inhibitor in clinical development for cancer.Kruger EA et al
98158361997A phase I study of TNP-470 administered to patients with advanced squamous cell cancer of the cervix.Kudelka AP et al
82977161994Cytostatic inhibition of endothelial cell growth by the angiogenesis inhibitor TNP-470 (AGM-1470).Kusaka M et al
158146492005Methionine aminopeptidase 2 inhibition is an effective treatment strategy for neuroblastoma in preclinical models.Morowitz MJ et al
108138692000Increased expression of N-myristoyltransferase in gallbladder carcinomas.Rajala RV et al
168466462007Potential role of N-myristoyltransferase in cancer.Selvakumar P et al
156824662005Fumagillin treatment of hepatocellular carcinoma in rats: an in vivo study of antiangiogenesis.Sheen IS et al
91771761997The anti-angiogenic agent fumagillin covalently binds and inhibits the methionine aminopeptidase, MetAP-2.Sin N et al
103958171999Processing of the N termini of nascent polypeptide chains requires deformylation prior to methionine removal.Solbiati J et al
145342932003Proteomics-based target identification: bengamides as a new class of methionine aminopeptidase inhibitors.Towbin H et al
182641372008Ectopic expression of methionine aminopeptidase-2 causes cell transformation and stimulates proliferation.Tucker LA et al
92526821997Immunohistochemical expression of p53, bcl-2, mdm2 and waf1/p21 proteins in colorectal adenocarcinomas.Valassiadou KE et al
107609542000Selective inhibition of endothelial cell proliferation by fumagillin is not due to differential expression of methionine aminopeptidases.Wang J et al
146337142003Tumor suppression by a rationally designed reversible inhibitor of methionine aminopeptidase-2.Wang J et al
110700902000The antiangiogenic agent TNP-470 requires p53 and p21CIP/WAF for endothelial cell growth arrest.Yeh JR et al
108415472000Cell cycle inhibition by the anti-angiogenic agent TNP-470 is mediated by p53 and p21WAF1/CIP1.Zhang Y et al

Other Information

Locus ID:

NCBI: 10988
MIM: 601870
HGNC: 16672
Ensembl: ENSG00000111142

Variants:

dbSNP: 10988
ClinVar: 10988
TCGA: ENSG00000111142
COSMIC: METAP2

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000111142ENST00000261220P50579
ENSG00000111142ENST00000323666P50579
ENSG00000111142ENST00000323666A0A140VJE3
ENSG00000111142ENST00000535095G3V1U3
ENSG00000111142ENST00000546753P50579
ENSG00000111142ENST00000549502F8VSC4
ENSG00000111142ENST00000549808F8VZX9
ENSG00000111142ENST00000550777F8VRR3
ENSG00000111142ENST00000551840F8VQZ7
ENSG00000111142ENST00000553151F8VY03

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90

Pathways

PathwaySourceExternal ID
Signal TransductionREACTOMER-HSA-162582
Visual phototransductionREACTOMER-HSA-2187338
The phototransduction cascadeREACTOMER-HSA-2514856
Inactivation, recovery and regulation of the phototransduction cascadeREACTOMER-HSA-2514859

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
91771761997The anti-angiogenic agent fumagillin covalently binds and inhibits the methionine aminopeptidase, MetAP-2.140
205217642010Protein N-terminal processing: substrate specificity of Escherichia coli and human methionine aminopeptidases.59
127185462003Physiologically relevant metal cofactor for methionine aminopeptidase-2 is manganese.33
162742222005Structural basis for the functional differences between type I and type II human methionine aminopeptidases.27
206898072010Genetic variation and antioxidant response gene expression in the bronchial airway epithelium of smokers at risk for lung cancer.23
231617752013MicroRNA profiling in pediatric pilocytic astrocytoma reveals biologically relevant targets, including PBX3, NFIB, and METAP2.23
258861452015N-terminal acetylome analysis reveals the specificity of Naa50 (Nat5) and suggests a kinetic competition between N-terminal acetyltransferases and methionine aminopeptidases.17
119942922002Methionine aminopeptidase 2 is a new target for the metastasis-associated protein, S100A4.15
159623122005Methionine aminopeptidases type I and type II are essential to control cell proliferation.14
182641372008Ectopic expression of methionine aminopeptidase-2 causes cell transformation and stimulates proliferation.13

Citation

Ponniah Selvakumar ; Rajendra K Sharma

METAP2 (methionyl aminopeptidase 2)

Atlas Genet Cytogenet Oncol Haematol. 2009-07-01

Online version: http://atlasgeneticsoncology.org/gene/46053/metap2