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NFKB1

Identity

Other namesNF-kB p105
NF-kB p50
Hugo NFKB1
Location 4q23-q24
Note see also, in the Deep Insight section: Upstream Signal Transduction of NF-kB Activation

DNA/RNA

Description The gene encoding human nfkb1 has 24 exons spanning 156 kb. The expression of nfkb1 can be positively regulated by NF-kB itself and possibly Ets family transcription factors.

Protein

 
Description The nfkb1 gene encodes a protein composed 968 amino acids with an approximately molecular weight of 105 kDa, which was considered as a precursor of p50 subunit of NF-kB complexes. In the N-terminal region of NF-kB1, there is a Rel homology domain (RHD) composed of ~300 amino acids that are responsible for DNA binding, dimerization with other Rel family members, and interaction with IkB proteins. The C-terminal region of NF-kB1 contains multiple copies of the so-called ankyrin repeats which is found in IkB family members, including IkBa, IkBb, IkBe, Bcl3, and Drosophila cactus. The earlier studies by several groups demonstrated that NF-kB1 was posttranslationally cleaved to produce the p50 molecule through the ubiquitin-proteasome dependent degradation of the C-terminal portion of NF-kB1. Further studies by Lin and Ghosh suggested that a glycine-rich region (GRR) within the region of 375 to 400 of NF-kB1 is necessary and sufficient for directing the cleavage of NF-kB1. However, recent studies challenged this model and revealed a novel mechanism in which p50 is generated by a unique cotranslational processing event involving the 26S proteasome. In other words, NF-kB1 is not the precursor of p50.
Expression nfkb1 is widely expressed in virtually all type of cells in both adults and in the embryo.
Localisation cytosol, nuclei after activation.
Function regulation of the genes involved in cell-to-cell interaction, intercellular communication, cell recruitment or transmigration, amplification or spreading of primary pathogenic signals, and initiation or acceleration of tumorigenesis. The full length of NF-kB1 can serve as an endogenous inhibitor for the NF-kB p50/p65(RelA) heterodimer. It has been proposed that the homodimer of NF-kB p50 was transcriptionally inactive in the absence of Bcl3. Furthermore, the NF-kB p50 homodimer may function to competitively inhibit B binding by transactivating NF- B dimers. The Bcl3 protein can form a complex with this homodimer at B sites and act as a transactivator of NF-kB p50 homodimer. Interaction with : members of IkB family and Rel family, LYL1 , Bcl3, NCOA1a(V).

Implicated in

Entity cancer (see below), autoimmune arthritis, glomerulonephritis, asthma, inflammatory bowel disease, septic shock, lung fibrosis, HTLV-1 infection, and AIDS.
Oncogenesis overexpression of nfkb1 has been found in a number of human cancer including non-small cell lung carcinoma, colon cancer, prostate cancer, breast cancer, bone cancer and brain cancer. The rearrangement of nfkb1 gene, however, only has been identified in certain acute lymphoblastic leukemias.
  

External links

Nomenclature
HugoNFKB1
GDBNFKB1
Entrez_GeneNFKB1  4790  nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)
Cards
AtlasNFKB1ID323
GeneCardsNFKB1
EnsemblNFKB1 [Search_View]   ENSG00000109320 [Gene_View]
GenatlasNFKB1
GeneLynxNFKB1
eGenomeNFKB1
euGene4790
Genomic and cartography
GoldenPathNFKB1  -     chr4:103641518-103757506 +  4q24   [Description]    (hg18-Mar_2006)
EnsemblNFKB1 - 4q24 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneNFKB1
Gene and transcription
GenbankAK122850 [ ENTREZ ]
GenbankAK291450 [ ENTREZ ]
GenbankBC033210 [ ENTREZ ]
GenbankBC051765 [ ENTREZ ]
GenbankBQ023914 [ ENTREZ ]
RefSeqNM_003998 [ SRS ]    NM_003998 [ ENTREZ ]
RefSeqAC_000047 [ SRS ]    AC_000047 [ ENTREZ ]
RefSeqAC_000136 [ SRS ]    AC_000136 [ ENTREZ ]
RefSeqNC_000004 [ SRS ]    NC_000004 [ ENTREZ ]
RefSeqNT_016354 [ SRS ]    NT_016354 [ ENTREZ ]
RefSeqNW_001838915 [ SRS ]    NW_001838915 [ ENTREZ ]
RefSeqNW_922162 [ SRS ]    NW_922162 [ ENTREZ ]
AceViewNFKB1 AceView - NCBI
UnigeneHs.654408 [ SRS ]    Hs.654408 [ NCBI ]     HS654408 [ spliceNest ]
Fast-db7894 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP19838 [ SRS]    P19838 [ EXPASY ]     P19838 [ INTERPRO ]
PrositePS50297 ANK_REP_REGION [ SRS ]    PS50297 ANK_REP_REGION [ Expasy ]
PrositePS50088 ANK_REPEAT [ SRS ]    PS50088 ANK_REPEAT [ Expasy ]
PrositePS50017 DEATH_DOMAIN [ SRS ]    PS50017 DEATH_DOMAIN [ Expasy ]
PrositePS01204 REL_1 [ SRS ]    PS01204 REL_1 [ Expasy ]
PrositePS50254 REL_2 [ SRS ]    PS50254 REL_2 [ Expasy ]
InterproIPR002110 ANK [ SRS ]    IPR002110 ANK [ EBI ]
InterproIPR000488 Death [ SRS ]    IPR000488 Death [ EBI ]
InterproIPR011029 DEATH_like [ SRS ]    IPR011029 DEATH_like [ EBI ]
InterproIPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
InterproIPR002909 IPT_TIG_rcpt [ SRS ]    IPR002909 IPT_TIG_rcpt [ EBI ]
InterproIPR000451 NF_Rel_dor [ SRS ]    IPR000451 NF_Rel_dor [ EBI ]
InterproIPR011539 RHD [ SRS ]    IPR011539 RHD [ EBI ]
CluSTrP19838
PfamPF00023 Ank [ SRS ]    PF00023 Ank [ Sanger ]    pfam00023 [ NCBI-CDD ]
PfamPF00531 Death [ SRS ]    PF00531 Death [ Sanger ]    pfam00531 [ NCBI-CDD ]
PfamPF00554 RHD [ SRS ]    PF00554 RHD [ Sanger ]    pfam00554 [ NCBI-CDD ]
PfamPF01833 TIG [ SRS ]    PF01833 TIG [ Sanger ]    pfam01833 [ NCBI-CDD ]
SmartSM00248 ANK [EMBL]
SmartSM00005 DEATH [EMBL]
SmartSM00429 IPT [EMBL]
BlocksP19838
PDBNFKB1 [ SRS ]    NFKB1 [ PdbSum ],   NFKB1 [ IMB ]   NFKB1 [ RSDB ]
HPRD01238
Protein Interaction databases
DIPP19838
IntActP19838
Polymorphism : SNP, mutations, diseases
OMIM164011    [ map ]   
GENECLINICS164011
SNPNFKB1 [dbSNP-NCBI]  
SNPNM_003998 [SNP-NCI]  
SNPNFKB1 [GeneSNPs - Utah]  NFKB1] [HGBASE - SRS]
HAPMAPNFKB1 [HAPMAP]  
COSMICNFKB1 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDNFKB1
General knowledge
Family BrowserNFKB1 [UCSC Family Browser]
SOURCENM_003998
SMDHs.654408
SAGEHs.654408
GOtranscription factor activity [Amigo]  transcription factor activity
GOprotein binding [Amigo]  protein binding
GOnucleus [Amigo]  nucleus
GOnucleoplasm [Amigo]  nucleoplasm
GOcytoplasm [Amigo]  cytoplasm
GOcytosol [Amigo]  cytosol
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOtranscription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GOapoptosis [Amigo]  apoptosis
GOanti-apoptosis [Amigo]  anti-apoptosis
GOinflammatory response [Amigo]  inflammatory response
GOsignal transduction [Amigo]  signal transduction
GOpositive regulation of transcription [Amigo]  positive regulation of transcription
BIOCARTAThe 4-1BB-dependent immune response    [Genes]
BIOCARTAHIV-I Nef: negative effector of Fas and TNF    [Genes]
BIOCARTAAcetylation and Deacetylation of RelA in The Nucleus    [Genes]
BIOCARTAInfluence of Ras and Rho proteins on G1 to S Transition    [Genes]
BIOCARTAAKT Signaling Pathway    [Genes]
BIOCARTAATM Signaling Pathway    [Genes]
BIOCARTARole of EGF Receptor Transactivation by GPCRs in Cardiac Hypertrophy    [Genes]
BIOCARTACD40L Signaling Pathway    [Genes]
BIOCARTACadmium induces DNA synthesis and proliferation in macrophages    [Genes]
BIOCARTACeramide Signaling Pathway    [Genes]
BIOCARTACXCR4 Signaling Pathway    [Genes]
BIOCARTAInduction of apoptosis through DR3 and DR4/5 Death Receptors    [Genes]
BIOCARTAErythropoietin mediated neuroprotection through NF-kB    [Genes]
BIOCARTAfMLP induced chemokine gene expression in HMC-1 cells    [Genes]
BIOCARTAFree Radical Induced Apoptosis    [Genes]
BIOCARTACorticosteroids and cardioprotection    [Genes]
BIOCARTAInactivation of Gsk3 by AKT causes accumulation of b-catenin in Alveolar Macrophages    [Genes]
BIOCARTAHuman Cytomegalovirus and Map Kinase Pathways    [Genes]
BIOCARTASignal transduction through IL1R    [Genes]
BIOCARTAKeratinocyte Differentiation    [Genes]
BIOCARTAMAPKinase Signaling Pathway    [Genes]
BIOCARTANF-kB Signaling Pathway    [Genes]
BIOCARTANFkB activation by Nontypeable Hemophilus influenzae    [Genes]
BIOCARTAThe information-processing pathway at the IFN-beta enhancer    [Genes]
BIOCARTAActivation of PKC through G protein coupled receptor    [Genes]
BIOCARTABone Remodelling    [Genes]
BIOCARTARas Signaling Pathway    [Genes]
BIOCARTADouble Stranded RNA Induced Gene Expression    [Genes]
BIOCARTATNF/Stress Related Signaling    [Genes]
BIOCARTATACI and BCMA stimulation of B cell immune responses.    [Genes]
BIOCARTAT Cell Receptor Signaling Pathway    [Genes]
BIOCARTAChaperones modulate interferon Signaling Pathway    [Genes]
BIOCARTATNFR2 Signaling Pathway    [Genes]
BIOCARTAToll-Like Receptor Pathway    [Genes]
BIOCARTANeuropeptides VIP and PACAP inhibit the apoptosis of activated T cells    [Genes]
KEGGMAPK signaling pathway
KEGGApoptosis
KEGGToll-like receptor signaling pathway
KEGGT cell receptor signaling pathway
KEGGB cell receptor signaling pathway
KEGGAdipocytokine signaling pathway
KEGGEpithelial cell signaling in Helicobacter pylori infection
PubGeneNFKB1
TreeFamNFKB1
CTD4790 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeNFKB1 Related clones (RZPD - Berlin)
PubMed
PubMed499 Pubmed reference(s) in LocusLink

Bibliography

Related subunits of NF-kappa B map to two distinct loci associated with translocations in leukemia, NFKB1 and NFKB2.
Liptay S, Schmid RM, Perkins ND, Meltzer P, Altherr MR, McPherson JD, Wasmuth JJ, Nabel GJ
Genomics. 1992 ; 13 (2) : 287-292.
PMID 1612589
 
The NF-kappa B and I kappa B proteins: new discoveries and insights.
Baldwin AS Jr
Annual review of immunology. 1996 ; 14 : 649-683.
PMID 8717528
 
NF-kappa B and Rel proteins: evolutionarily conserved mediators of immune responses.
Ghosh S, May MJ, Kopp EB
Annual review of immunology. 1998 ; 16 : 225-260.
PMID 9597130
 
Cotranslational biogenesis of NF-kappaB p50 by the 26S proteasome.
Lin L, DeMartino GN, Greene WC
Cell. 1998 ; 92 (6) : 819-828.
PMID 9529257
 
New insights into the role of nuclear factor-kappaB, a ubiquitous transcription factor in the initiation of diseases.
Chen F, Castranova V, Shi X, Demers LM
Clinical chemistry. 1999 ; 45 (1) : 7-17.
PMID 9895331
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2002Fei Chen

Citation

This paper should be referenced as such :
Chen F . NFKB1. Atlas Genet Cytogenet Oncol Haematol. January 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/NFKB1ID323.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 14 17:47:34 2008


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