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NONO

Identity

HGNC (Hugo) NONO
Location Xq12
Location_base_pair Starts at 70419767 and ends at 70437741 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Transcription alternative splicing; 2.4 mRNA complete cds; coding sequence: CDS 129 ... 1550

Protein

 
Description the protein encoded by NONO is called p54nrb (nuclear RNA binbing); 471 amino acids; 54 kDa; N-term glutamine/histidine rich region, tandem RNA binding domains (amino acids 75 to 228), helix-turn-helix implicated in DNA binding, and a proline rich region in C-term; N-term and C-term allow protein-protein interactions.
Expression wide
Function binds independantly to DNA and RNA; forms a heterodimer with PSF, a protein sharing vast homologies; both form complexes with DNA topoisomerase I, which renders this enzyme much more active; NONO also enhances the binding of several DNA-binding proteins (but not all).
Homology with PSF and other proteins with a DBHS domain (Drosophila behaviour, human splicing) which includes the tandem RNA binding domains.

Implicated in

Entity inv(X)(p11.2q12) in renal cell carcinoma -->NonO/TFE3
Disease only one case of papillary renal cell carcinoma
 
Hybrid/Mutated Gene 5' NONO- 3' TFE3
Abnormal Protein N-term NONO and most of it except the C-term proline rich sequence fused to the DNA binding domains of TFE3 (excluding the acidic transcriptional activation domain, including the C-term helix-loop-helix, and the leucine zipper); the reciprocal transcript is found
  

External links

Nomenclature
HGNC (Hugo)NONO   7871
Entrez_Gene (NCBI)NONO  4841  non-POU domain containing, octamer-binding
Cards
AtlasNONOID168
GeneCards (Weizmann)NONO
Ensembl (Hinxton)ENSG00000147140 [Gene_View]  NONO [Vega]
AceView (NCBI)NONO
Genatlas (Paris)NONO
euGene (Indiana)4841
SOURCE (Stanford)NM_001145408 NM_001145409 NM_001145410 NM_007363
Genomic and cartography
GoldenPath (UCSC)NONO  -  Xq12   chrX:70419767-70437741 +  Xq13.1   [Description]    (hg18-Mar_2006)
EnsemblNONO - Xq13.1 [CytoView]
Mapping of homologs : NCBINONO [Mapview]
OMIM300084   
Gene and transcription
Gene : Genbank (Entrez)AK055406 AK291140 AK297144 AU119361 BC002364
Reference sequence (RefSeq transcript) :SRSNM_001145408 NM_001145409 NM_001145410 NM_007363
Reference transcript : EntrezNM_001145408 NM_001145409 NM_001145410 NM_007363
RefSeq genomic : SRSAC_000066 AC_000155 NC_000023 NT_011669 NW_001842373 NW_927711
RefSeq genomic : EntrezAC_000066 AC_000155 NC_000023 NT_011669 NW_001842373 NW_927711
Consensus coding sequences : CCDS NCBINONO
Cluster EST : UnigeneHs.533282 [ SRS ] Hs.533282 [ NCBI ]
Alternative Splicing : Fast-db (Paris)10541
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ15233 (SRS) Q15233 (Expasy) Q15233 (Uniprot)
With graphics : InterProQ15233
Splice isoforms : VarSplice FASTAQ15233(VarSplice FASTA)
Domaine pattern : Prosite (SRS)RRM (PS50102)   
Domain pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (SRS)a_b_plait_nuc_bd    NOPS    RRM_RNP1   
Domains : Interpro (EBI)a_b_plait_nuc_bd    NOPS    RRM_RNP1   
Related proteins : CluSTrQ15233
Domain families : Pfam SRSNOPS (PF08075)    RRM_1 (PF00076)   
Domain families : Pfam SangerNOPS (PF08075)    RRM_1 (PF00076)   
Domain families : Pfam NCBIpfam08075    pfam00076   
Domain families : Smart EMBLRRM (SM00360)
Blocks (Seattle)Q15233
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD02098
Protein Interaction databases
DIP (DOE-UCLA)Q15233
IntAct (EBI)Q15233
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBINONO
SNP : GeneSNP UtahNONO
SNP : HGBaseNONO
Genetic variants : HAPMAPNONO
Somatic Mutations in Cancer : COSMICNONO 
Mutations and Diseases : HGMDNONO
Hereditary diseases : OMIM300084   
Hereditary diseases : GENETests300084   
Diseases : Genetic AssociationNONO
General knowledge
Homologs : HomoloGeneNONO
Homology/Alignments : Family Browser UCSCNONO
Phylogenetic Trees/Animal Genes : TreeFamNONO
Chemical/Protein Interactions : CTD4841
Keywords Ontology : AmiGOnucleotide binding  DNA binding  RNA binding  nucleus  DNA repair  DNA recombination  transcription  regulation of transcription, DNA-dependent  mRNA processing  response to DNA damage stimulus  RNA splicing  identical protein binding  
Keywords Ontology : EGO-EBInucleotide binding  DNA binding  RNA binding  nucleus  DNA repair  DNA recombination  transcription  regulation of transcription, DNA-dependent  mRNA processing  response to DNA damage stimulus  RNA splicing  identical protein binding  
Pathways : BIOCARTARNA polymerase III transcription [Genes]   
Pathways : KEGG
Other databases
Probes
Probes : ImagenesNONO Related clones (RZPD - Berlin)
Literature
PubMed45 Pubmed reference(s) in Entrez
PubGeneNONO

Bibliography

Purification and cDNA cloning of HeLa cell p54nrb, a nuclear protein with two RNA recognition motifs and extensive homology to human splicing factor PSF and Drosophila NONA/BJ6.
Dong B, Horowitz DS, Kobayashi R, Krainer AR
Nucleic acids research. 1993 ; 21 (17) : 4085-4092.
PMID 8371983
 
NonO, a non-POU-domain-containing, octamer-binding protein, is the mammalian homolog of Drosophila nonAdiss.
Yang YS, Hanke JH, Carayannopoulos L, Craft CM, Capra JD, Tucker PW
Molecular and cellular biology. 1993 ; 13 (9) : 5593-5603.
PMID 8355702
 
Fusion of splicing factor genes PSF and NonO (p54nrb) to the TFE3 gene in papillary renal cell carcinoma.
Clark J, Lu YJ, Sidhar SK, Parker C, Gill S, Smedley D, Hamoudi R, Linehan WM, Shipley J, Cooper CS
Oncogene. 1997 ; 15 (18) : 2233-2239.
PMID 9393982
 
NonO enhances the association of many DNA-binding proteins to their targets.
Yang YS, Yang MC, Tucker PW, Capra JD
Nucleic acids research. 1997 ; 25 (12) : 2284-2292.
PMID 9171077
 
The RNA-splicing factor PSF/p54 controls DNA-topoisomerase I activity by a direct interaction.
Straub T, Grue P, Uhse A, Lisby M, Knudsen BR, Tange TO, Westergaard O, Boege F
The Journal of biological chemistry. 1998 ; 273 (41) : 26261-26264.
PMID 9756848
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-1999Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . NONO. Atlas Genet Cytogenet Oncol Haematol. January 1999 .
URL : http://AtlasGeneticsOncology.org/Genes/NONOID168.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jun 27 16:39:24 CEST 2009

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