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PRDM16 (PR domain containing 16)

Identity

Other namesMEL1 (MDS1/EVI1-like gene)
PR-domain zinc finger protein 16
HGNC PRDM16
Location 1p36.3
Note orientation plus strand

DNA/RNA

Description spans 369 kb; 17exons; 3827 bp coding sequence.
Transcription alternative transcripts MEL1 and MEL1S (MEL1 short)

Protein

Description 17O kDa (MEL1) and 150 Da (MEL1S); like MDS1/EVI1, The MEL1contains a PR domain (homologous to the SET domain present in MLL ) in the N term, two DNA binding domains (made of 7 and 3 zing fingers) separated by a repression domain, and an acidic domain at the C-term.
MEL1S lacks the PR domain, like EVI1 alone.
MEL1 and MEL1S, in a "yin-yang fashion", are hypothezised to display antagonistic properties; the PR domain may act as an inhibitor of tumorigenesis.
Expression wide, contrarily to what was previously found
Localisation nuclear
Homology 63% homology with MDS1/EVI1; both are members of the PR domain family

Implicated in

Entity t(1;3)(p36;q21) myeloid leukemias --> involving RPN1 and MEL1
Disease myelodysplastic syndromes (MDS), acute non lymphoblastic leukemias (ANLL), therapy-related leukemias and myeloprolifrative syndromes; with features similar to those of the 3q21q26 syndrome, including megakaryocytic dysplasia (see also 3q rearrangements in myeloid malignancies).
Prognosis very poor
Hybrid/Mutated Gene juxtaposition of the enhancer of the constitutively expressed housekeeping gene RPN1, normally sitting in 3q21, in 5' of MEL1 on der(1); both genes are orientated telomere to centromere; the same situation occurs between RPN1 in 5' of EVI1 in the t(3;3)(q21;q26) )
Oncogenesis the translocation results in either an ectopic expression of MEL1 driven by RPN1or by disruption of its PR domain; this probable heterogenity may be associated with different clinical features. The short form, MEL1S, is mainly expressed
  

External links

Nomenclature
HGNCPRDM16   14000
Entrez_GenePRDM16  63976  PR domain containing 16
Cards
AtlasPRDM16MEL1ID408
GeneCardsPRDM16
EnsemblPRDM16 [Search_View]   ENSG00000142611 [Gene_View]
GenatlasPRDM16
GeneLynxPRDM16
eGenomePRDM16
euGene63976
Genomic and cartography
GoldenPathPRDM16  -  1p36.3   chr1:2975604-3345045 +  1p36.23-p33   [Description]    (hg18-Mar_2006)
EnsemblPRDM16 - 1p36.23-p33 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGenePRDM16
Gene and transcription
GenbankAB051462 [ ENTREZ ]
GenbankAB078876 [ ENTREZ ]
GenbankAF294278 [ ENTREZ ]
GenbankAI623202 [ ENTREZ ]
GenbankAK093853 [ ENTREZ ]
RefSeqNM_022114 [ SRS ]    NM_022114 [ ENTREZ ]
RefSeqNM_199454 [ SRS ]    NM_199454 [ ENTREZ ]
RefSeqAC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeqAC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeqNC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeqNT_004321 [ SRS ]    NT_004321 [ ENTREZ ]
RefSeqNW_001838618 [ SRS ]    NW_001838618 [ ENTREZ ]
RefSeqNW_922461 [ SRS ]    NW_922461 [ ENTREZ ]
RefSeqNW_923572 [ SRS ]    NW_923572 [ ENTREZ ]
AceViewPRDM16 AceView - NCBI
UnigeneHs.99500 [ SRS ]    Hs.99500 [ NCBI ]     HS99500 [ spliceNest ]
Fast-db1649 (alternative variants)
Protein : pattern, domain, 3D structure
HPRD16122
Protein Interaction databases
Polymorphism : SNP, mutations, diseases
OMIM605557    [ map ]   
GENECLINICS605557
SNPPRDM16 [dbSNP-NCBI]  
SNPNM_022114 [SNP-NCI]  
SNPNM_199454 [SNP-NCI]  
SNPPRDM16 [GeneSNPs - Utah]  PRDM16] [HGBASE - SRS]
HAPMAPPRDM16 [HAPMAP]  
COSMICPRDM16 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDPRDM16
General knowledge
Family BrowserPRDM16 [UCSC Family Browser]
SOURCENM_022114
SOURCENM_199454
SMDHs.99500
SAGEHs.99500
GOtranscription factor activity [Amigo]  transcription factor activity
GOintracellular [Amigo]  intracellular
GOnucleus [Amigo]  nucleus
GOtranscription [Amigo]  transcription
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOzinc ion binding [Amigo]  zinc ion binding
GOmetal ion binding [Amigo]  metal ion binding
PubGenePRDM16
TreeFamPRDM16
CTD63976 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbePRDM16 Related clones (RZPD - Berlin)
PubMed
PubMed15 Pubmed reference(s) in LocusLink

Bibliography

Fusion of the transcription factor TFE3 gene to a novel gene, PRCC, in t(X;1)(p11;q21)-positive papillary renal cell carcinomas.
Weterman MA, Wilbrink M, Geurts van Kessel A
Proceedings of the National Academy of Sciences of the United States of America. 1996 ; 93 (26) : 15294-15298.
PMID 8986805
 
A novel gene, MEL1, mapped to 1p36.3 is highly homologous to the MDS1/EVI1 gene and is transcriptionally activated in t(1;3)(p36;q21)-positive leukemia cells.
Mochizuki N, Shimizu S, Nagasawa T, Tanaka H, Taniwaki M, Yokota J, Morishita K
Blood. 2000 ; 96 (9) : 3209-3214.
PMID 11050005
 
A novel EVI1 gene family, MEL1, lacking a PR domain (MEL1S) is expressed mainly in t(1;3)(p36;q21)-positive AML and blocks G-CSF-induced myeloid differentiation.
Nishikata I, Sasaki H, Iga M, Tateno Y, Imayoshi S, Asou N, Nakamura T, Morishita K
Blood. 2003 ; 102 (9) : 3323-3332.
PMID 12816872
 
Breakpoints at 1p36.3 in three MDS/AML(M4) patients with t(1;3)(p36;q21) occur in the first intron and in the 5' region of MEL1.
Xinh PT, Tri NK, Nagao H, Nakazato H, Taketazu F, Fujisawa S, Yagasaki F, Chen YZ, Hayashi Y, Toyoda A, Hattori M, Sakaki Y, Tokunaga K, Sato Y
Genes, chromosomes & cancer. 2003 ; 36 (3) : 313-316.
PMID 12557231
 
Molecular characterization of a t(1;3)(p36;q21) in a patient with MDS. MEL1 is widely expressed in normal tissues, including bone marrow, and it is not overexpressed in the t(1;3) cells.
Lahortiga I, Agirre X, Belloni E, Vˆ°zquez I, Larrayoz MJ, Gasparini P, Lo Coco F, Pelicci PG, Calasanz MJ, Odero MD
Oncogene. 2004 ; 23 (1) : 311-316.
PMID 14712237
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2004Jean-Loup Huret, Sylvie Senon

Citation

This paper should be referenced as such :
Huret JL, Senon S . PRDM16 (PR domain containing 16). Atlas Genet Cytogenet Oncol Haematol. April 2004 .
URL : http://AtlasGeneticsOncology.org/Genes/PRDM16MEL1ID408.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:16:35 2008


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