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TCL1B (T-cell leukemia/lymphoma 1B)

Identity

Other namesTML1
HGNC (Hugo) TCL1B
LocusID (NCBI) 9623
Location 14q32.13
Location_base_pair Starts at 96152754 and ends at 96158980 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order centromere - TCL6 (TNG1 and TNG2) - TCL1B - TCL1A - telomere

DNA/RNA

Description 6.5 kb TCL1B cDNA. 4 exons (181, 171, 69, 697 bp); centromere - exons 1 to 4 - telomere orientation; only the first three exons are coding. Located 15-16 kb centromeric of TCL1A.
Transcription TCL1B transcripts detected by RT-PCR or Northern blot in fetal tissues (liver, thymus, spleen, and kidney) and in testis, placenta, peripheral blood lymphocytes, kidney, tonsil, spleen, and bone marrow.
Pseudogene Localized to 5q12-5q13, lacks an initiating ATG and introns and has a stop codon in the middle of the ORF.

Protein

Description 15 kDa, 128 amino acid protein; one domain with a beta-barrel topology.
Expression Undefined
Localisation Undefined
Function Undefined in vivo but binds and coactivates AKT (protein kinase B) in vitro and in transfected cell lines.
Homology 30% identical to TCL1A, 60% similar to TCL1A
36% identical to MTCP1, 63% similar to MTCP1

Implicated in

Entity Expression in rare mature T cell leukemias carrying t(14;14)(q11;q32.1) causing a TCRalpha/delta-TCL1A/TCL1B translocation.
Expression in some Burkitt lymphoma cell lines.
Disease May be upregulated in T-cell prolymphocytic leukemia (T-PLL) with t(14;14)(q11;q32.1) and in Burkitt lymphoma .
Oncogenesis TCL1 over expression by chromosomal rearrangement is a critical oncogenetic mechanism in T-PLL; a role for TCL1B over expression in oncogenesis is not yet shown.
  

External links

Nomenclature
HGNC (Hugo)TCL1B   11649
Entrez_Gene (NCBI)TCL1B  9623  T-cell leukemia/lymphoma 1B
Cards
AtlasTCL1BID354ch14q32
GeneCards (Weizmann)TCL1B
Ensembl (Hinxton)ENSG00000213231 [Gene_View]  chr14:96152754-96158980 [Contig_View]  TCL1B [Vega]
AceView (NCBI)TCL1B
Genatlas (Paris)TCL1B
euGene (Indiana)9623
SOURCE (Stanford)NM_004918 NM_199206
Genomic and cartography
GoldenPath (UCSC)TCL1B  -  14q32.13   chr14:96152754-96158980 +  14q32.1   [Description]    (hg19-Feb_2009)
EnsemblTCL1B - 14q32.1 [CytoView]
Mapping of homologs : NCBITCL1B [Mapview]
OMIM603769   
Gene and transcription
Genbank (Entrez)AB018563 AF110466 AF137027 AI250350 BC041616
RefSeq transcript (SRS)NM_004918 NM_199206
RefSeq transcript (Entrez)NM_004918 NM_199206
RefSeq genomic (SRS)AC_000146 NC_000014 NT_026437 NW_001838115
RefSeq genomic (Entrez)AC_000146 NC_000014 NT_026437 NW_001838115
Consensus coding sequences : CCDS (NCBI)TCL1B
Cluster EST : UnigeneHs.632346 [ SRS ] Hs.632346 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5433
Alternative Splicing GalleryENSG00000213231
Gene ExpressionTCL1B [ NCBI-GEO ]   TCL1B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95988 (SRS) O95988 (Uniprot)
With graphics : InterProO95988
Splice isoforms : SwissVarO95988(Swissvar)
Domains : Interpro (SRS)TCL1_MTCP1   
Domains : Interpro (EBI)TCL1_MTCP1   
Related proteins : CluSTrO95988
Domain families : Pfam (SRS)TCL1_MTCP1 (PF01840)   
Domain families : Pfam (Sanger)TCL1_MTCP1 (PF01840)   
Domain families : Pfam (NCBI)pfam01840   
Domain structure : Prodom (Prabi Lyon)TCL1_MTCP1 (PD015575)   
Blocks (Seattle)O95988
Human Protein AtlasENSG00000213231
HPRD04795
IPIIPI00001504   IPI00385245   
Protein Interaction databases
DIP (DOE-UCLA)O95988
IntAct (EBI)O95988
FunCoupENSG00000213231
REACTOMETCL1B
BioGRIDTCL1B
InParanoidO95988
Interologous Interaction database O95988
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TCL1B
SNP (GeneSNP Utah)TCL1B
SNP : HGBaseTCL1B
Genetic variants : HAPMAPTCL1B
Somatic Mutations in Cancer : COSMICTCL1B 
CONAN: Copy Number AnalysisTCL1B 
Mutations and Diseases : HGMDTCL1B
OMIM603769   
GENETests603769   
Disease Genetic AssociationTCL1B
Huge Navigator TCL1B [HugePedia]  TCL1B [HugeCancerGEM]
Genomic VariantsTCL1B
snp3D : Map Gene to Disease9623
General knowledge
Homologs : HomoloGeneTCL1B
Homology/Alignments : Family Browser (UCSC)TCL1B
Phylogenetic Trees/Animal Genes : TreeFamTCL1B
Chemical/Protein Interactions : CTD9623
Chemical/Pharm GKB GenePA36401
Clinical trialTCL1B
Cancer Resource (Charite)ENSG00000213231
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Probes : ImagenesTCL1B Related clones (RZPD - Berlin)
Litterature
PubMed11 Pubmed reference(s) in Entrez
PubGeneTCL1B
iHOPTCL1B

Bibliography

Abnormalities at 14q32.1 in T cell malignancies involve two oncogenes.
Pekarsky Y, Hallas C, Isobe M, Russo G, Croce CM
Proceedings of the National Academy of Sciences of the United States of America. 1999 ; 96 (6) : 2949-2951.
PMID 10077617
 
Identification of the TCL1/MTCP1-like 1 (TML1) gene from the region next to the TCL1 locus.
Sugimoto J, Hatakeyama T, Narducci MG, Russo G, Isobe M
Cancer research. 1999 ; 59 (10) : 2313-2317.
PMID 10344735
 
The protooncogene TCL1 is an Akt kinase coactivator.
Laine J, Kˆºnstle G, Obata T, Sha M, Noguchi M
Molecular cell. 2000 ; 6 (2) : 395-407.
PMID 10983986
 
Tcl1 enhances Akt kinase activity and mediates its nuclear translocation.
Pekarsky Y, Koval A, Hallas C, Bichi R, Tresini M, Malstrom S, Russo G, Tsichlis P, Croce CM
Proceedings of the National Academy of Sciences of the United States of America. 2000 ; 97 (7) : 3028-3033.
PMID 10716693
 
Differential regulation of Akt kinase isoforms by the members of the TCL1 oncogene family.
Laine J, Kˆºnstle G, Obata T, Noguchi M
The Journal of biological chemistry. 2002 ; 277 (5) : 3743-3751.
PMID 11707444
 
The TCL1 family of oncoproteins: co-activators of transformation.
Teitell MA
Nature reviews. Cancer. 2005 ; 5 (8) : 640-648.
PMID 16056259
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2008Herbert Eradat, Michael A Teitell
Departments of Medicine (H.E.) and Pathology and Laboratory Medicine (M.A.T.), David Geffen School of Medicine at UCLA, 675 Charles Young Drive South, 4-762 MacDonald Research Laboratories, Los Angeles, CA 90095-1732, USA

Citation

This paper should be referenced as such :
Eradat H, Teitell MA . TCL1B (T-cell leukemia/lymphoma 1B). Atlas Genet Cytogenet Oncol Haematol. January 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/TCL1BID354ch14q32.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/38579/1/01-2008-TCL1BID354ch14q32.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 14:59:50 CEST 2012

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