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TPM3 (tropomyosin 3)

Identity

Other namesNEM1
HGNC (Hugo) TPM3
Location 1q25
Location_base_pair Starts at 152394404 and ends at 152422349 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Description spans at least 42 kb; 13 exons

Protein

Description by tissue-specific alternate splincing are produced 2 proteins: the tropomyosin alpha chain, skeletal muscle type, made of 284 amino acids (32 kDa), and the cytosqueletal type, made of 248 amino acids (29 kDa). Coiled-coil structure
Function Tropomyosins are actin-binding proteins; component of cytoskeletal microfilaments; tropomyosins mediate the effect of Ca2+ on the myosin-actin interaction In skeletal muscles, but their function in smooth muscles and other tissues is yet unknown
Homology Other tropomyosins: TPM1 (alpha) located in 15q22, TPM2 (beta), located in 9q13, and TPM4 located in 19p13.1

Implicated in

Entity rare cases of ALK+ anaplasic large cell lymphoma (ALCL) with t(1;2)(q25;p23)
Disease ALCL presents as an aggressive lymphoma with systemic signs
Prognosis nonetheless, have a favourable prognosis
Hybrid/Mutated Gene 5' CLTC - 3' ALK
Abnormal Protein 104 kDa ; 221 N-term amino acids from TPM3 fused to the 562 C-term amino acids from ALK (i.e. the entire cytoplasmic portion of ALK with the tyrosine kinase domain); homodimerization of the fusion protein.
Oncogenesis TPM3-ALK is contitutively activated
  
Entity cases of Inflammatory myofibroblastic tumors with t(1;2)(q25;p23)
Disease rare soft tissue tumour found in children and young adults
Prognosis good prognosis
Hybrid/Mutated Gene 5' CLTC - 3' ALK
Abnormal Protein 104 kDa ; 221 N-term amino acids from TPM3 fused to the 562 C-term amino acids from ALK (i.e. the entire cytoplasmic portion of ALK with the tyrosine kinase domain); homodimerization of the fusion protein.
Oncogenesis TPM3-ALK is contitutively activated
  
Entity papillary thyroid carcinoma
Disease represents about 60% of thyroid cancers; small, undetectable, chromosome 1q inversions have shown to produce a TPM3-NTRK1 hybrid gene in a very few cases of papillary thyroid carcinoma.
Prognosis prognosis of papillary thyroid carcinoma is excellent
Hybrid/Mutated Gene 5' TPM3 - 3' NTRK1
Abnormal Protein 221 N-term amino acids from PM3 fused to the C-term of NTRK1, including its tyrosine kinase domain
  

Breakpoints

 

To be noted

ALK and TPM3 are therefore implicated in both anaplasic large cell lymphoma and inflammatory myofibroblastic tumours; this is a new concept, that 2 different types of tumour may result from the same chromosomal and genes rearrangement.

External links

Nomenclature
HGNC (Hugo)TPM3   12012
Entrez_Gene (NCBI)TPM3  7170  tropomyosin 3
Cards
AtlasTPM3ID225
GeneCards (Weizmann)TPM3
Ensembl (Hinxton)ENSG00000143549 [Gene_View]  TPM3 [Vega]
AceView (NCBI)TPM3
Genatlas (Paris)TPM3
euGene (Indiana)7170
SOURCE (Stanford)NM_001043351 NM_001043352 NM_001043353 NM_152263 NM_153649
Genomic and cartography
GoldenPath (UCSC)TPM3  -  1q25   chr1:152394404-152422349 -  1q21.2   [Description]    (hg18-Mar_2006)
EnsemblTPM3 - 1q21.2 [CytoView]
Mapping of homologs : NCBITPM3 [Mapview]
OMIM161800   191030   
Gene and transcription
Gene : Genbank (Entrez)AA863064 AB062125 AF474157 AK026559 AK056889
Reference sequence (RefSeq transcript) :SRSNM_001043351 NM_001043352 NM_001043353 NM_152263 NM_153649
Reference transcript : EntrezNM_001043351 NM_001043352 NM_001043353 NM_152263 NM_153649
RefSeq genomic : SRSAC_000044 AC_000133 NC_000001 NG_008621 NT_004487 NW_001838529 NW_925683
RefSeq genomic : EntrezAC_000044 AC_000133 NC_000001 NG_008621 NT_004487 NW_001838529 NW_925683
Consensus coding sequences : CCDS NCBITPM3
Cluster EST : UnigeneHs.654421 [ SRS ] Hs.654421 [ NCBI ]
Alternative Splicing : Fast-db (Paris)17331
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP06753 (SRS) P06753 (Expasy) P06753 (Uniprot)
With graphics : InterProP06753
Splice isoforms : VarSplice FASTAP06753(VarSplice FASTA)
Domaine pattern : Prosite (SRS)TROPOMYOSIN (PS00326)   
Domain pattern : Prosite (Expaxy)TROPOMYOSIN (PS00326)   
Domains : Interpro (SRS)Tropomyosin   
Domains : Interpro (EBI)Tropomyosin   
Related proteins : CluSTrP06753
Domain families : Pfam SRSTropomyosin (PF00261)   
Domain families : Pfam SangerTropomyosin (PF00261)   
Domain families : Pfam NCBIpfam00261   
Blocks (Seattle)P06753
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD01840
Protein Interaction databases
DIP (DOE-UCLA)P06753
IntAct (EBI)P06753
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBITPM3
SNP : GeneSNP UtahTPM3
SNP : HGBaseTPM3
Genetic variants : HAPMAPTPM3
Somatic Mutations in Cancer : COSMICTPM3 
Translocation Breakpoints in Cancer : TICdbTPM3 
Mutations and Diseases : HGMDTPM3
Hereditary diseases : OMIM161800    191030   
Hereditary diseases : GENETests161800    191030   
Diseases : Genetic AssociationTPM3
General knowledge
Homologs : HomoloGeneTPM3
Homology/Alignments : Family Browser UCSCTPM3
Phylogenetic Trees/Animal Genes : TreeFamTPM3
Chemical/Protein Interactions : CTD7170
Keywords Ontology : AmiGOmolecular_function  actin binding  protein binding  cytoplasm  cytoskeleton  cytoskeleton  muscle thin filament tropomyosin  cell motion  regulation of muscle contraction  
Keywords Ontology : EGO-EBImolecular_function  actin binding  protein binding  cytoplasm  cytoskeleton  cytoskeleton  muscle thin filament tropomyosin  cell motion  regulation of muscle contraction  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesTPM3 Related clones (RZPD - Berlin)
Literature
PubMed64 Pubmed reference(s) in Entrez
PubGeneTPM3

Bibliography

A human oncogene formed by the fusion of truncated tropomyosin and protein tyrosine kinase sequences.
Martin-Zanca D, Hughes SH, Barbacid M
Nature. 1986 ; 319 (6056) : 743-748.
PMID 2869410
 
A sequence analysis of the genomic regions involved in the rearrangements between TPM3 and NTRK1 genes producing TRK oncogenes in papillary thyroid carcinomas.
Butti MG, Bongarzone I, Ferraresi G, Mondellini P, Borrello MG, Pierotti MA
Genomics. 1995 ; 28 (1) : 15-24.
PMID 7590742
 
A new fusion gene TPM3-ALK in anaplastic large cell lymphoma created by a (1;2)(q25;p23) translocation.
Lamant L, Dastugue N, Pulford K, Delsol G, Mariamˆ© B
Blood. 1999 ; 93 (9) : 3088-3095.
PMID 10216106
 
Complex variant translocation t(1;2) with TPM3-ALK fusion due to cryptic ALK gene rearrangement in anaplastic large-cell lymphoma.
Siebert R, Gesk S, Harder L, Steinemann D, Grote W, Schlegelberger B, Tiemann M, Wlodarska I, Schemmel V
Blood. 1999 ; 94 (10) : 3614-3617.
PMID 10610119
 
Recurrent involvement of 2p23 in inflammatory myofibroblastic tumors.
Griffin CA, Hawkins AL, Dvorak C, Henkle C, Ellingham T, Perlman EJ
Cancer research. 1999 ; 59 (12) : 2776-2780.
PMID 10383129
 
Tropomyosin and actin isoforms modulate the localization of tropomyosin strands on actin filaments.
Lehman W, Hatch V, Korman V, Rosol M, Thomas L, Maytum R, Geeves MA, Van Eyk JE, Tobacman LS, Craig R
Journal of molecular biology. 2000 ; 302 (3) : 593-606.
PMID 10986121
 
Aberrant ALK tyrosine kinase signaling. Different cellular lineages, common oncogenic mechanisms.
Ladanyi M
The American journal of pathology. 2000 ; 157 (2) : 341-345.
PMID 10934137
 
TPM3-ALK and TPM4-ALK oncogenes in inflammatory myofibroblastic tumors.
Lawrence B, Perez-Atayde A, Hibbard MK, Rubin BP, Dal Cin P, Pinkus JL, Pinkus GS, Xiao S, Yi ES, Fletcher CD, Fletcher JA
The American journal of pathology. 2000 ; 157 (2) : 377-384.
PMID 10934142
 
Deciphering the design of the tropomyosin molecule.
Brown JH, Kim KH, Jun G, Greenfield NJ, Dominguez R, Volkmann N, Hitchcock-DeGregori SE, Cohen C
Proceedings of the National Academy of Sciences of the United States of America. 2001 ; 98 (15) : 8496-8501.
PMID 11438684
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2001Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . TPM3 (tropomyosin 3). Atlas Genet Cytogenet Oncol Haematol. August 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/TPM3ID225.html

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indexed on : Sat Jun 27 16:41:08 CEST 2009

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