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TRC8 (translocation in renal carcinoma, chromosome 8 gene)

Identity

Other namesRCA1
HRCA1
MGC31961
8_125443572
Hugo RNF139
Location 8q24.31

DNA/RNA

Description The TRC8 gene covers 13.96 kb. The gene contains 2 confirmed introns, 2 of which are alternative. The gene showed similarity to the hereditary basal cell carcinoma/segment polarity gene, 'patched' (PTCH) This similarity involved 2 regions of 'patched,' the putative sterol-sensing domain and the second extracellular loop that participates in the binding of sonic hedgehog (SHH). In the t(3;8) translocation, TRC8 was found to be fused to FHIT and disrupted within the sterol-sensing domain. In contrast, the FHIT coding region was maintained and expressed. In a series of sporadic renal carcinomas, an acquired TRC8 mutation was identified. By analogy to patched, TRC8 might function as a signaling receptor, and other pathway members, to be defined, are mutation candidates in malignant diseases involving the kidney and thyroid.

Protein

Description 664 amino acids
Localisation Plasma membrane
Function The protein encoded by this gene is a multi-membrane spanning protein containing a RING-H2 finger. This protein is located in the endoplasmic reticulum, and has been shown to possess ubiquitin ligase activity. This gene was found to be interrupted by a t(3:8) translocation in a family with hereditary renal and non-medulary thyroid cancer. Studies of the Drosophila counterpart suggested that this protein may interact with tumor suppressor protein VHL, as well as with COPS5/JAB1, a protein responsible for the degradation of tumor suppressor CDKN1B/P27KIP

Implicated in

Entity t(3;8)(p14.2;q24.1) and hereditary renal cell cancer.
Disease familial renal cell cancer
Cytogenetics Disruption of the gene because of the t(3;8) translocation.
Hybrid/Mutated Gene FHIT/TRC8. Although studies demonstrated that the 3p14.2 breakpoint interrupted the fragile histidine triad gene (FHIT) in its 5-prime noncoding region, several reasons made it unlikely that FHIT is causally related to renal or other malignancies.
  

External links

Nomenclature
HugoRNF139
GDBRNF139
Entrez_GeneRNF139  11236  ring finger protein 139
Cards
AtlasTRC8ID500
GeneCardsRNF139
EnsemblRNF139 [Search_View]   ENSG00000170881 [Gene_View]
GenatlasRNF139
GeneLynxRNF139
eGenomeRNF139
euGene11236
Genomic and cartography
GoldenPathRNF139  -  8q24.31   chr8:125556189-125570039 +  8q24   [Description]    (hg18-Mar_2006)
EnsemblRNF139 - 8q24 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneRNF139
Gene and transcription
GenbankAA455970 [ ENTREZ ]
GenbankAF064801 [ ENTREZ ]
GenbankAK001602 [ ENTREZ ]
GenbankAK025043 [ ENTREZ ]
GenbankAK098519 [ ENTREZ ]
RefSeqNM_007218 [ SRS ]    NM_007218 [ ENTREZ ]
RefSeqAC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeqNC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeqNT_008046 [ SRS ]    NT_008046 [ ENTREZ ]
RefSeqNW_923984 [ SRS ]    NW_923984 [ ENTREZ ]
AceViewRNF139 AceView - NCBI
UnigeneHs.632057 [ SRS ]    Hs.632057 [ NCBI ]     HS632057 [ spliceNest ]
Fast-db8472 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ8WU17 [ SRS]    Q8WU17 [ EXPASY ]     Q8WU17 [ INTERPRO ]
PrositePS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
PrositePS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
InterproIPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
InterproIPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTrQ8WU17
PfamPF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
SmartSM00184 RING [EMBL]
BlocksQ8WU17
HPRD04333
Protein Interaction databases
DIPQ8WU17
IntActQ8WU17
Polymorphism : SNP, mutations, diseases
OMIM144700;603046    [ map ]   
GENECLINICS144700;603046
SNPRNF139 [dbSNP-NCBI]  
SNPNM_007218 [SNP-NCI]  
SNPRNF139 [GeneSNPs - Utah]  RNF139] [HGBASE - SRS]
HAPMAPRNF139 [HAPMAP]  
COSMICRNF139 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDRNF139
General knowledge
Family BrowserRNF139 [UCSC Family Browser]
SOURCENM_007218
SMDHs.632057
SAGEHs.632057
GOreceptor activity [Amigo]  receptor activity
GOprotein binding [Amigo]  protein binding
GOendoplasmic reticulum [Amigo]  endoplasmic reticulum
GOendoplasmic reticulum membrane [Amigo]  endoplasmic reticulum membrane
GOubiquitin cycle [Amigo]  ubiquitin cycle
GOzinc ion binding [Amigo]  zinc ion binding
GOmembrane [Amigo]  membrane
GOintegral to membrane [Amigo]  integral to membrane
GOligase activity [Amigo]  ligase activity
GOregulation of protein ubiquitination [Amigo]  regulation of protein ubiquitination
GOmetal ion binding [Amigo]  metal ion binding
PubGeneRNF139
TreeFamRNF139
CTD11236 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeRNF139 Related clones (RZPD - Berlin)
PubMed
PubMed10 Pubmed reference(s) in LocusLink

Bibliography

Hereditary renal-cell carcinoma associated with a chromosomal translocation.
Cohen AJ, Li FP, Berg S, Marchetto DJ, Tsai S, Jacobs SC, Brown RS
The New England journal of medicine. 1979 ; 301 (11) : 592-595.
PMID 470981
 
The TRC8 hereditary kidney cancer gene suppresses growth and functions with VHL in a common pathway.
Gemmill RM, Bemis LT, Lee JP, Sozen MA, Baron A, Zeng C, Erickson PF, Hooper JE, Drabkin HA
Oncogene. 2002 ; 21 (22) : 3507-3516.
PMID 12032852
 
Sonic Hedgehog signalling in the developing and adult brain.
Charytoniuk D, Porcel B, Rodrˆ‚guez Gomez J, Faure H, Ruat M, Traiffort E
Journal of physiology, Paris. 2002 ; 96 (1-2) : 9-16.
PMID 11755778
 
RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination.
Lorick KL, Jensen JP, Fang S, Ong AM, Hatakeyama S, Weissman AM
Proceedings of the National Academy of Sciences of the United States of America. 1999 ; 96 (20) : 11364-11369.
PMID 10500182
 
The hereditary renal cell carcinoma 3;8 translocation fuses FHIT to a patched-related gene, TRC8.
Gemmill RM, West JD, Boldog F, Tanaka N, Robinson LJ, Smith DI, Li F, Drabkin HA
Proceedings of the National Academy of Sciences of the United States of America. 1998 ; 95 (16) : 9572-9577.
PMID 9689122
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written06-2004Anita Bonné, Eric Schoenmakers, Ad Geurts van Kessel

Citation

This paper should be referenced as such :
Bonné A, Schoenmakers EFPMG, Geurts van Kessel A . TRC8 (translocation in renal carcinoma, chromosome 8 gene). Atlas Genet Cytogenet Oncol Haematol. June 2004 .
URL : http://AtlasGeneticsOncology.org/Genes/TRC8ID500.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:27:50 2008


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