ERCC2 (Excision repair cross-complementing rodent repair deficiency, complementation group 2)

2001-02-01   Anne Stary , Alain Sarasin 

Laboratory of Genetic Instability, Cancer, UPR2169 CNRS, Institut de Recherches sur le Cancer, 7, rue guy Moquet, BP 8, 94801 VILLEJUIF, France

Identity

HGNC
LOCATION
19q13.32
IMAGE
Atlas Image
LEGEND
XPD (19q13) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics.
LOCUSID
ALIAS
COFS2,EM9,TFIIH,TTD,TTD1,XPD
FUSION GENES

DNA/RNA

Description

54336 bp; 23 exons

Transcription

2400b mRNA

Proteins

Description

760 amino acids

Expression

ubiquitous

Localisation

nuclear

Function

5-3 ATP-dependent helicase activity involved in DNA excision repair (NER) and as a subunit of the basal transcription factor TFIIH
The XPD gene product displayed 5-3 helicase activity. The XPD as the XPB protein are also found in the transcription factor TFIIH, a large complex involved in the initiation of transcription The striking discovery that subunits of basal transcription factor TFIIH were involved in Nucleotide Excision Repair (NER) sheds light on a new aspect of NER : a close coupling to transcription via common use of essential factors. TFIIH fulfills a dual role in transcription initiation and NER and the role of TFIIH in NER might closely mimic its role in the transcription initiation process. In transcription initiation TFIIH is thought to be involved in unwinding of the promoter site and to allow promoter clearance. In the NER process TFIIH causes unwinding of the damage containing region that has been localized by XPC-HR23B and XPA-RPA, enabling the accumulation of NER proteins around the damaged site. Contrarely to the XPB helicase, the helicase activity of XPD is indispensable for NER but not for transcription initiation. So, there is much more XPD patients, and only two patients have been described as XP and CS.

Homology

FLYBASE :Xpd ; MGI : Ercc2 (Nb 95413)

Mutations

Germinal

17 mutated sites associated with the xeroderma pigmentosum group D syndrome (among them 3 are also associated with the Cockaynesyndrome) and 15 mutated sites associated with the trichothiodystrophy syndrome

Implicated in

Entity name
xeroderma pigmentosum (XP), XP associated with Cockayne syndrome (CS), and trichothiodystrophy (TTD)
Disease
predisposition to skin cancer: early skin cancers (XPD). Mental and stature abnormalities (XP/CS, and TTD)

Bibliography

Pubmed IDLast YearTitleAuthors

Other Information

Locus ID:

NCBI: 2068
MIM: 126340
HGNC: 3434
Ensembl: ENSG00000104884

Variants:

dbSNP: 2068
ClinVar: 2068
TCGA: ENSG00000104884
COSMIC: ERCC2

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000104884ENST00000391941A8MX75
ENSG00000104884ENST00000391944E7EVE9
ENSG00000104884ENST00000391945P18074
ENSG00000104884ENST00000485403P18074
ENSG00000104884ENST00000586131K7EIT8
ENSG00000104884ENST00000586856K7ENL1
ENSG00000104884ENST00000587376K7EKF3
ENSG00000104884ENST00000591309B4E0F6

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45

Pathways

PathwaySourceExternal ID
Basal transcription factorsKEGGko03022
Nucleotide excision repairKEGGko03420
Basal transcription factorsKEGGhsa03022
Nucleotide excision repairKEGGhsa03420
Holo-TFIIH complexKEGGhsa_M00290
Holo-TFIIH complexKEGGM00290
DiseaseREACTOMER-HSA-1643685
Infectious diseaseREACTOMER-HSA-5663205
HIV InfectionREACTOMER-HSA-162906
HIV Life CycleREACTOMER-HSA-162587
Late Phase of HIV Life CycleREACTOMER-HSA-162599
Transcription of the HIV genomeREACTOMER-HSA-167172
HIV Transcription InitiationREACTOMER-HSA-167161
RNA Polymerase II HIV Promoter EscapeREACTOMER-HSA-167162
RNA Pol II CTD phosphorylation and interaction with CE during HIV infectionREACTOMER-HSA-167160
HIV Transcription ElongationREACTOMER-HSA-167169
Formation of the HIV-1 Early Elongation ComplexREACTOMER-HSA-167158
Tat-mediated elongation of the HIV-1 transcriptREACTOMER-HSA-167246
Formation of HIV-1 elongation complex containing HIV-1 TatREACTOMER-HSA-167200
Formation of HIV elongation complex in the absence of HIV TatREACTOMER-HSA-167152
Gene ExpressionREACTOMER-HSA-74160
Generic Transcription PathwayREACTOMER-HSA-212436
Transcriptional Regulation by TP53REACTOMER-HSA-3700989
RNA Polymerase I, RNA Polymerase III, and Mitochondrial TranscriptionREACTOMER-HSA-504046
RNA Polymerase I TranscriptionREACTOMER-HSA-73864
RNA Polymerase I Promoter ClearanceREACTOMER-HSA-73854
RNA Polymerase I Transcription InitiationREACTOMER-HSA-73762
RNA Polymerase I Promoter EscapeREACTOMER-HSA-73772
RNA Polymerase I Chain ElongationREACTOMER-HSA-73777
RNA Polymerase I Transcription TerminationREACTOMER-HSA-73863
RNA Polymerase II TranscriptionREACTOMER-HSA-73857
RNA Polymerase II Pre-transcription EventsREACTOMER-HSA-674695
RNA Polymerase II Transcription Pre-Initiation And Promoter OpeningREACTOMER-HSA-73779
RNA Polymerase II Transcription Initiation And Promoter ClearanceREACTOMER-HSA-76042
RNA Polymerase II Transcription InitiationREACTOMER-HSA-75953
RNA Polymerase II Promoter EscapeREACTOMER-HSA-73776
RNA Pol II CTD phosphorylation and interaction with CEREACTOMER-HSA-77075
RNA Polymerase II Transcription ElongationREACTOMER-HSA-75955
Formation of the Early Elongation ComplexREACTOMER-HSA-113418
Formation of RNA Pol II elongation complexREACTOMER-HSA-112382
mRNA CappingREACTOMER-HSA-72086
Epigenetic regulation of gene expressionREACTOMER-HSA-212165
Negative epigenetic regulation of rRNA expressionREACTOMER-HSA-5250941
NoRC negatively regulates rRNA expressionREACTOMER-HSA-427413
MetabolismREACTOMER-HSA-1430728
Cytosolic iron-sulfur cluster assemblyREACTOMER-HSA-2564830
DNA RepairREACTOMER-HSA-73894
Nucleotide Excision RepairREACTOMER-HSA-5696398
Global Genome Nucleotide Excision Repair (GG-NER)REACTOMER-HSA-5696399
Formation of Incision Complex in GG-NERREACTOMER-HSA-5696395
Dual Incision in GG-NERREACTOMER-HSA-5696400
Transcription-Coupled Nucleotide Excision Repair (TC-NER)REACTOMER-HSA-6781827
Formation of TC-NER Pre-Incision ComplexREACTOMER-HSA-6781823
Dual incision in TC-NERREACTOMER-HSA-6782135
Gap-filling DNA repair synthesis and ligation in TC-NERREACTOMER-HSA-6782210
TP53 Regulates Transcription of DNA Repair GenesREACTOMER-HSA-6796648

Protein levels (Protein atlas)

Not detected
Low
Medium
High

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA128406956fluorouracilChemicalClinicalAnnotation, VariantAnnotationambiguousPD18267032, 20078613, 20385995, 28796378
PA131285527oxaliplatinChemicalClinicalAnnotation, VariantAnnotationassociatedPD18267032, 19434073, 20078613, 20385995, 21449681, 22026922, 22188361, 29662106
PA150595617platinumChemicalClinicalAnnotationassociatedPD19434073, 21449681, 22026922, 22188361, 29662106
PA164713176Platinum compoundsChemicalClinicalAnnotation, VariantAnnotationambiguousPD18347182, 19434073, 21449681, 22026922, 22188361, 23962907, 24446315, 25069034, 25592234, 27498158, 27995989, 28796378, 29662106
PA166122986radiotherapyChemicalVariantAnnotationnot associatedPD28796378
PA166123026progression-free survivalDiseaseVariantAnnotationassociatedPD
PA166124223pneumonitisDiseaseClinicalAnnotationassociatedPD25069034
PA166151827adverse eventsDiseaseClinicalAnnotationassociatedPD27498158
PA443314AlopeciaDiseaseClinicalAnnotationassociatedPD
PA443340AnemiaDiseaseClinicalAnnotationassociatedPD
PA443560Breast NeoplasmsDiseaseClinicalAnnotationassociatedPD25495407
PA443622Carcinoma, Non-Small-Cell LungDiseaseClinicalAnnotationassociatedPD24446315, 25069034, 27498158
PA444101Esophageal NeoplasmsDiseaseClinicalAnnotationassociatedPD19434073, 21449681, 22026922, 22188361, 29662106
PA444773LeukopeniaDiseaseClinicalAnnotationassociatedPD
PA444937MesotheliomaDiseaseClinicalAnnotationassociatedPD
PA445062NeoplasmsDiseaseClinicalAnnotationassociatedPD18347182, 22026922, 22188361, 23962907, 24446315, 25592234, 27995989, 29662106
PA445204Ovarian NeoplasmsDiseaseClinicalAnnotationassociatedPD19434073, 21449681, 22026922, 22188361, 29662106
PA445218Pancreatic NeoplasmsDiseaseClinicalAnnotationassociatedPD19434073, 21449681, 22026922, 22188361, 29662106
PA445601OsteosarcomaDiseaseClinicalAnnotationassociatedPD19434073, 21449681, 22026922, 22188361, 29662106
PA445742Stomach NeoplasmsDiseaseVariantAnnotationnot associatedPD28796378
PA445828Testicular NeoplasmsDiseaseClinicalAnnotationassociatedPD
PA446108Colorectal NeoplasmsDiseaseClinicalAnnotation, VariantAnnotationassociatedPD18267032, 19434073, 20078613, 20385995, 21449681, 22026922, 22188361, 29662106
PA448645bleomycinChemicalClinicalAnnotationassociatedPD
PA449014cisplatinChemicalClinicalAnnotationassociatedPD19434073, 21449681, 22026922, 22188361, 29662106
PA449383docetaxelChemicalClinicalAnnotationassociatedPD25495407
PA449552etoposideChemicalClinicalAnnotationassociatedPD
PA449748gemcitabineChemicalClinicalAnnotationassociatedPD
PA450198leucovorinChemicalClinicalAnnotation, VariantAnnotationassociatedPD18267032, 20078613, 20385995

References

Pubmed IDYearTitleCitations
250962332014Somatic ERCC2 mutations correlate with cisplatin sensitivity in muscle-invasive urothelial carcinoma.116
161952372006Polymorphisms of DNA repair genes and risk of non-small cell lung cancer.112
185091812008Predictive biomarkers of chemotherapy efficacy in colorectal cancer: results from the UK MRC FOCUS trial.96
185785682008Crystal structure of the FeS cluster-containing nucleotide excision repair helicase XPD.96
174666262007Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair.95
271110332016Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors.95
112454332001Modulation of nucleotide excision repair capacity by XPD polymorphisms in lung cancer patients.92
115328662001XRCC1, XRCC3, XPD gene polymorphisms, smoking and (32)P-DNA adducts in a sample of healthy subjects.91
164656222006Bladder cancer predisposition: a multigenic approach to DNA-repair and cell-cycle-control genes.91
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85

Citation

Anne Stary ; Alain Sarasin

ERCC2 (Excision repair cross-complementing rodent repair deficiency, complementation group 2)

Atlas Genet Cytogenet Oncol Haematol. 2001-02-01

Online version: http://atlasgeneticsoncology.org/gene/297/deep-insight-explorer/