RHOC (ras homolog gene family, member C)

2007-06-01   Ahmad Faried , Leri S. Faried 

Department of General Surgical Science, Graduate School of Medicine, Gunma University, Japan

Identity

HGNC
LOCATION
1p13.2
LOCUSID
ALIAS
ARH9,ARHC,H9,RHOH9
FUSION GENES

DNA/RNA

Description

The RhoC gene contains 6 exons and 5 introns. It was predicted to span over approximately 6.3 kb of the genomic DNA with mRNA size approximately 1116 bp. This gene is related to a gene originally identified in the marine snail, Aplysia. After the original cloning of Rho gene in Aplysia californica, then several genes in mammal been identified and divided into several subfamily, among them is (RhoA, RhoB and RhoC isoforms). In 1993, human ARH9 (RhoC), was reexamined and showed that it was present in choromosome 1. Human cDNA of RhoC proteins were isolated from the complete H9Rho (clone 9) coding sequence. Other group isolated RhoC from adult retina library.

Transcription

Three alternative transcripts encoding the same protein have been identified for RhoC gene.

Proteins

Description

The primary protein sequences of Rho-subfamily (RhoA, B and C) are about 85% identical, with most divergence close to the C-terminus. The sequence divergence among RhoA, B and C is found in the insert loop, a helix between amino acids 123 and 137. The RhoC consists of 193 amino acids corresponding to a molecular weight of 22 kDa. RhoC protein consists of GTPase binding domain in the N-terminal. In C-terminal consists of geranylgeranyl group and carboxyl methylation extension. RhoC contains the sequence motif of GTP-binding proteins, bind to GDP and GTP with high affinity and are involved in cycle between in-active, GDP-bound and active, GTP-bound states. RhoC displays about 30% amino acids identity with Ras proteins which mainly clustered in four highly homologues internal region corresponding to the GTP binding site.

Expression

The RhoC proteins are over-expressed in bladder carcinoma, breast carcinoma, and in the squamous cell carcinoma of the head and neck. At mRNA level, RhoC are over-expressed in adenocarcinoma of the ovary, pancreatic cancer and hepatocellular carcinoma.

Localisation

Mainly in the cytoplasm, there is a small fraction localized in the plasma membrane of the Rat-2 fibroblast cells and associated with undefined perinuclear structures.

Function

The Rho proteins are involved in multiple processes, such as organization of the cytoskeletal components, cell division or intracellular trafficking. Role of RhoC also been observed in limb development. The RhoC protein has been connected to cancer development. It is up-regulated in malignant pancreatic ductal carcinoma, inflammatory breast cancer tumors and highly metastatic melanoma. Ectopic over-expression of this gene increases the tumorigenic and metastasis properties of tumor progenitor cell. RhoC also induces the expression of angiogenic factors in human mammary epithelial cells, by facilitating the vascularization of tumors in which it is expressed.

Homology

At least there are five homologues of RhoC sequences with pair-wise similarity from 80-100% at the amino acids level. Among them in dog (Canis lupus familiaris), rat (Rattus norvergicus), mouse (Mus musculus), zebrafish (Danio rerio), and chicken (Gallus gallus).

Mutations

Germinal

Not found in Homo sapiens

Somatic

Not found in Homo sapiens

Implicated in

Entity name
Morphogenesis
Note
The RhoC exhibits specific expression domain in regions undergoing major cell rearrangement process in the developing limb autopod, including the prechondrogeneic aggregates, the developing interphalangeal joints and tendons. Functional experiments indicate that RhoC is a regulator of mesenchymal cell shape and adhesiveness, acting as a modulator of digit morphogenesis and joint formation.
Entity name
Malignancy
Disease
The RhoC reported to be over-expressed in many human cancers (see above).
Prognosis
The RhoC over-expression is a predictor of poor prognosis in malignancy.
Oncogenesis
The RhoC and RhoA are 94% identical, only 11 amino acids are different. RhoC plays a major role in cell locomotion compare with RhoA. Over-expression of RhoC is closely related with tumor cell invasion and metastasis.

Bibliography

Pubmed IDLast YearTitleAuthors

Other Information

Locus ID:

NCBI: 389
MIM: 165380
HGNC: 669
Ensembl: ENSG00000155366

Variants:

dbSNP: 389
ClinVar: 389
TCGA: ENSG00000155366
COSMIC: RHOC

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000155366ENST00000285735P08134
ENSG00000155366ENST00000285735A0A024R0I3
ENSG00000155366ENST00000339083P08134
ENSG00000155366ENST00000339083A0A024R0I3
ENSG00000155366ENST00000369632P08134
ENSG00000155366ENST00000369632A0A024R0I3
ENSG00000155366ENST00000369633P08134
ENSG00000155366ENST00000369633A0A024R0I3
ENSG00000155366ENST00000369636Q5JR05
ENSG00000155366ENST00000369637P08134
ENSG00000155366ENST00000369637A0A024R0I3
ENSG00000155366ENST00000369638P08134
ENSG00000155366ENST00000369638A0A024R0I3
ENSG00000155366ENST00000369642P08134
ENSG00000155366ENST00000369642A0A024R0I3
ENSG00000155366ENST00000414971Q5JR06
ENSG00000155366ENST00000425265Q5JR08
ENSG00000155366ENST00000436685Q5JR07
ENSG00000155366ENST00000468093E9PLA2
ENSG00000155366ENST00000484054E9PN11
ENSG00000155366ENST00000484280E9PLA2
ENSG00000155366ENST00000528831E9PLA2
ENSG00000155366ENST00000534717E9PQH6

Expression (GTEx)

0
50
100
150
200
250
300

Pathways

PathwaySourceExternal ID
Signal TransductionREACTOMER-HSA-162582
Signaling by Rho GTPasesREACTOMER-HSA-194315
Rho GTPase cycleREACTOMER-HSA-194840
RHO GTPase EffectorsREACTOMER-HSA-195258
RHO GTPases Activate ROCKsREACTOMER-HSA-5627117
RHO GTPases activate PKNsREACTOMER-HSA-5625740
RHO GTPases activate CITREACTOMER-HSA-5625900
RHO GTPases Activate ForminsREACTOMER-HSA-5663220
RHO GTPases Activate Rhotekin and RhophilinsREACTOMER-HSA-5666185
Signaling by GPCRREACTOMER-HSA-372790
GPCR downstream signalingREACTOMER-HSA-388396
G alpha (12/13) signalling eventsREACTOMER-HSA-416482
Developmental BiologyREACTOMER-HSA-1266738
Axon guidanceREACTOMER-HSA-422475
Semaphorin interactionsREACTOMER-HSA-373755
Sema4D in semaphorin signalingREACTOMER-HSA-400685
Sema4D induced cell migration and growth-cone collapseREACTOMER-HSA-416572

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
215763922011RhoA and RhoC have distinct roles in migration and invasion by acting through different targets.118
156681382005Anti-RhoA and anti-RhoC siRNAs inhibit the proliferation and invasiveness of MDA-MB-231 breast cancer cells in vitro and in vivo.85
243766402013MicroRNA-10b promotes nucleus pulposus cell proliferation through RhoC-Akt pathway by targeting HOXD10 in intervetebral disc degeneration.81
202323932010Downregulation of the Rho GTPase signaling pathway is involved in the microRNA-138-mediated inhibition of cell migration and invasion in tongue squamous cell carcinoma.70
128081212003Up-regulation of small GTPases, RhoA and RhoC, is associated with tumor progression in ovarian carcinoma.65
201012122010Formin-like 2 drives amoeboid invasive cell motility downstream of RhoC.60
222936822012miR-10b promotes cell invasion through RhoC-AKT signaling pathway by targeting HOXD10 in gastric cancer.56
118395782002Characterization of RhoC expression in benign and malignant breast disease: a potential new marker for small breast carcinomas with metastatic ability.55
122210962002XPLN, a guanine nucleotide exchange factor for RhoA and RhoB, but not RhoC.54
234889322013RhoA, RhoB and RhoC have different roles in cancer cell migration.52

Citation

Ahmad Faried ; Leri S. Faried

RHOC (ras homolog gene family, member C)

Atlas Genet Cytogenet Oncol Haematol. 2007-06-01

Online version: http://atlasgeneticsoncology.org/gene/42110/haematological-explorer/