SLC16A1 (solute carrier family 16, member 1 (monocarboxylic acid transporter 1))

2010-02-01   Céline Pinheiro  , Fátima Baltazar  

Life, Health Sciences Research Institute, School of Health Sciences, University of Minho, Campus of Gualtar, 4710-057 Braga, Portugal

Identity

HGNC
LOCATION
1p13.2
LOCUSID
ALIAS
HHF7,MCT,MCT1,MCT1D
FUSION GENES

DNA/RNA

Note

Human SLC16A1 was firstly cloned in 1994, by Garcia and colleagues. Structural gene organization as well as isolation and characterization of SLC16A1 promoter was achieved in 2002, by Cuff and Shirazi-Beechey.

Description

44507 bp lenght, containing 5 exons. Various SNPs have been described in SLC16A1 gene.

Transcription

6 transcripts have been described for this gene (4 with protein product, 2 with no protein product): SLC16A1-001 (5 exons; 3910 bps transcript length; 500 residues translation length); SLC16A1-002 (5 exons; 2101 bps transcript length; 456 residues translation length); SLC16A1-003 (4 exons; 865 bps transcript length; 215 residues translation length); SLC16A1-004 (2 exons; 452 bps transcript length; no translation product); SLC16A1-005 (4 exons; 1099 bps transcript length; 296 residues translation length); SLC16A1-006 (2 exons; 430 bps transcript length; no translation product).

Pseudogene

1 related pseudogene identified - AKR7 family pseudogene (AFARP1), non-coding RNA.

Proteins

Atlas Image
Protein diagram drawn following UniProtKB/Swiss-Prot database prediction, using TMRPres2D software.

Description

500 amino acids; 53958 Da; 12 transmembrane domains, intracellular N- and C-terminal and a large intracellular loop between transmembrane domains 6 and 7.

Expression

Ubiquitous.

Localisation

Plasma membrane; also described in rat mitochondrial and peroxisomal membranes.

Function

Catalyses the proton-linked transport of metabolically important monocarboxylates such as lactate, pyruvate, branched-chain oxo acids derived from leucine, valine and isoleucine, and ketone bodies (acetoacetate, beta-hydroxybutyrate and acetate).

Homology

Belongs to the major facilitator superfamily (MFS). Monocarboxylate porter (TC 2.A.1.13) family. SLC16A1 gene is conserved in chimpanzee, dog, cow, mouse, rat, chicken, and zebrafish.

Implicated in

Entity name
Various cancers
Note
MCT1/SLC16A1 has been described to be upregulated in a variety of tumours.
Disease
High grade glial neoplasms (Mathupala et al., 2004; Fang et al., 2006), colorectal (Koukourakis et al., 2006; Pinheiro et al., 2008), lung (Koukourakis et al., 2007), cervical (Pinheiro et al., 2008), and breast carcinomas (Pinheiro et al., in Press).
Entity name
Breast cancer
Prognosis
In breast cancer, MCT1/SLC16A1 was found to be associated with poor prognostic variables such as basal-like subtype and high grade tumours (Pinheiro et al., in Press).
Oncogenesis
SLC16A1 is expressed in normal breast tissue, but is silenced in breast cancer due to gene methylation (Asada et al., 2003).
Entity name
Gastric cancer
Note
The prognostic value of CD147 (a MCT1/SLC16A1 and MCT4/SLC16A3 chaperone required for plasma membrane expression and activity) was associated with MCT1/SLC16A1 co-expression in gastric cancer cells (Pinheiro et al., 2009).
Prognosis
Co-expression of MCT1/SLC16A1 with CD147 was associated with advanced gastric carcinoma, Laurens intestinal type, TNM staging and lymph-node metastasis, in gastric cancer.
Entity name
Colorectal carcinoma
Note
MCT1/SLC16A1 has been described to be downregulated in colorectal carcinoma (Lamber et al., 2002).
Entity name
Erythrocyte lactate transporter defect
Note
Merezhinskaya et al. (2000) identified two heterozygous transitions in the SLC16A1 gene, in patients with erythrocyte lactate transporter defect: 610A-G transition (resulting in a lys204-to-glu (K204E) substitution in a highly conserved residue) and 1414G-A transition (resulting in a gly472-to-arg (G472R) substitution halfway along the cytoplasmic C-terminal chain). These substitutions are not conserved, but were not identified in 90 healthy control individuals. Erythrocyte lactate clearance in patients with these mutations was 40 to 50% that of normal control values.
Entity name
Hyperinsulinemic hypoglycemia familial 7
Note
Otonkoski et al. (2007) identified two heterozygotic alterations in the SLC16A1, in affected members of a Finnish family segregating autosomal dominant exercise-induced hyperinsulinemic hypoglycemia. First, a 163G-A transition in exon 1 located within a binding site for nuclear matrix protein-1 and predicted to disrupt the binding sites of 2 potential transcriptional repressors, and, secondly, a 25-bp insertion at nucleotide -24 introducing additional binding sites for the ubiquitous transcription factors SP1, USF and MZF1. The first variation leads to a 3-fold increase in transcription while the second variation leads to a 10-fold increase in transcription. These mutations were not found in 92 Finnish and German controls.

Article Bibliography

Pubmed IDLast YearTitleAuthors

Other Information

Locus ID:

NCBI: 6566
MIM: 600682
HGNC: 10922
Ensembl: ENSG00000155380

Variants:

dbSNP: 6566
ClinVar: 6566
TCGA: ENSG00000155380
COSMIC: SLC16A1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000155380ENST00000369626P53985
ENSG00000155380ENST00000369626A0A024R0H1
ENSG00000155380ENST00000429288Q5T8R4
ENSG00000155380ENST00000443580Q5T8R3
ENSG00000155380ENST00000458229Q5T8R5
ENSG00000155380ENST00000538576P53985
ENSG00000155380ENST00000538576A0A024R0H1

Expression (GTEx)

0
10
20
30
40
50
60
70

Pathways

PathwaySourceExternal ID
HemostasisREACTOMER-HSA-109582
Cell surface interactions at the vascular wallREACTOMER-HSA-202733
Basigin interactionsREACTOMER-HSA-210991
Transmembrane transport of small moleculesREACTOMER-HSA-382551
SLC-mediated transmembrane transportREACTOMER-HSA-425407
Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compoundsREACTOMER-HSA-425366
Proton-coupled monocarboxylate transportREACTOMER-HSA-433692
MetabolismREACTOMER-HSA-1430728
The citric acid (TCA) cycle and respiratory electron transportREACTOMER-HSA-1428517
Pyruvate metabolism and Citric Acid (TCA) cycleREACTOMER-HSA-71406
Pyruvate metabolismREACTOMER-HSA-70268

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
381679452024MCT1-governed pyruvate metabolism is essential for antibody class-switch recombination through H3K27 acetylation.0
382167232024The polymorphism T1470A of the SLC16A1 gene is associated with the lactate and ventilatory thresholds but not with fat oxidation capacity in young men.0
384331012024To initiate or not to initiate: A critical assessment of eIF2A, eIF2D, and MCT-1·DENR to deliver initiator tRNA to ribosomes.0
385390842024Oncogenic circ-SLC16A1 promotes progression of non-small cell lung cancer via regulation of the miR-1287-5p/profilin 2 axis.0
388206502024The N-terminal signature motif on the transporter MCT1 is critical for CD147-mediated trafficking.0
381679452024MCT1-governed pyruvate metabolism is essential for antibody class-switch recombination through H3K27 acetylation.0
382167232024The polymorphism T1470A of the SLC16A1 gene is associated with the lactate and ventilatory thresholds but not with fat oxidation capacity in young men.0
384331012024To initiate or not to initiate: A critical assessment of eIF2A, eIF2D, and MCT-1·DENR to deliver initiator tRNA to ribosomes.0
385390842024Oncogenic circ-SLC16A1 promotes progression of non-small cell lung cancer via regulation of the miR-1287-5p/profilin 2 axis.0
388206502024The N-terminal signature motif on the transporter MCT1 is critical for CD147-mediated trafficking.0
352390732023Immunohistochemical evaluation and prognostic value of monocarboxylate transporter 1 (MCT1) and 4 (MCT4) in T-cell non-Hodgkin lymphoma.3
368143182023Functional heterogeneity of MCT1 and MCT4 in metabolic reprogramming affects osteosarcoma growth and metastasis.4
369301122023Comprehensive analysis of pan-cancer reveals the potential of SLC16A1 as a prognostic and immunological biomarker.2
369822172023Prognostic Value of Monocarboxylate Transporter 1 Overexpression in Cancer: A Systematic Review.8
375416642023SETDB1 Methylates MCT1 Promoting Tumor Progression by Enhancing the Lactate Shuttle.4

Citation

Céline Pinheiro ; Fátima Baltazar

SLC16A1 (solute carrier family 16, member 1 (monocarboxylic acid transporter 1))

Atlas Genet Cytogenet Oncol Haematol. 2010-02-01

Online version: http://atlasgeneticsoncology.org/gene/44046/img/gene-explorer/js/lib/popper.js