SMYD5 (SMYD family member 5)

2007-04-01  

Identity

HGNC
SMYD5
LOCATION
2p13.2
LOCUSID
10322
ALIAS
NN8-4AG,RAI15,RRG1,ZMYND23
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 10322
HGNC: 16258
Ensembl: ENSG00000135632

Variants:

dbSNP: 10322
ClinVar: 10322
TCGA: ENSG00000135632
COSMIC: SMYD5

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000135632ENST00000258100E2QRN5
ENSG00000135632ENST00000389501Q6GMV2
ENSG00000135632ENST00000413491F8WEJ9
ENSG00000135632ENST00000443900C9IYN9
ENSG00000135632ENST00000629411F8WEJ9

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
387239472024Negative regulation of SH2B3 by SMYD5 controls epithelial-mesenchymal transition in lung cancer.0
387239472024Negative regulation of SH2B3 by SMYD5 controls epithelial-mesenchymal transition in lung cancer.0
368977782023The lysine methyltransferase SMYD5 amplifies HIV-1 transcription and is post-transcriptionally upregulated by Tat and USP11.6
368977782023The lysine methyltransferase SMYD5 amplifies HIV-1 transcription and is post-transcriptionally upregulated by Tat and USP11.6
336762312021Sperm chromatin-condensing protamine enhances SMYD5 thermal stability.2
336762312021Sperm chromatin-condensing protamine enhances SMYD5 thermal stability.2
289514592017SMYD5 Controls Heterochromatin and Chromosome Integrity during Embryonic Stem Cell Differentiation.19
289514592017SMYD5 Controls Heterochromatin and Chromosome Integrity during Embryonic Stem Cell Differentiation.19

Citation

Dessen P

SMYD5 (SMYD family member 5)

Atlas Genet Cytogenet Oncol Haematol. 2007-04-01

Online version: http://atlasgeneticsoncology.org/gene/47081/gene-explorer/tumors-explorer/gene-fusions/?id=47081