FAM13C (family with sequence similarity 13 member C)

2014-08-01  

Identity

HGNC
FAM13C
LOCATION
10q21.1
LOCUSID
220965
ALIAS
FAM13C1
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 220965
HGNC: 19371
Ensembl: ENSG00000148541

Variants:

dbSNP: 220965
ClinVar: 220965
TCGA: ENSG00000148541
COSMIC: FAM13C

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000148541ENST00000422313Q8NE31
ENSG00000148541ENST00000435852B7Z2K3
ENSG00000148541ENST00000468696H0YGW3
ENSG00000148541ENST00000468840Q8NE31
ENSG00000148541ENST00000489341A0A087X1H9
ENSG00000148541ENST00000512919D6RIX4
ENSG00000148541ENST00000611933Q8NE31
ENSG00000148541ENST00000614220A0A087X0M7
ENSG00000148541ENST00000618427Q8NE31
ENSG00000148541ENST00000618804Q8NE31
ENSG00000148541ENST00000619059A0A087X2G4
ENSG00000148541ENST00000621119A0A087X216
ENSG00000148541ENST00000622363A0A087X2G4

Expression (GTEx)

0
5
10
15
20
25
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
284155582017Family with sequence similarity 13C (FAM13C) overexpression is an independent prognostic marker in prostate cancer.5
284155582017Family with sequence similarity 13C (FAM13C) overexpression is an independent prognostic marker in prostate cancer.5
202009532010Genome-wide pleiotropy of osteoporosis-related phenotypes: the Framingham Study.27
202009532010Genome-wide pleiotropy of osteoporosis-related phenotypes: the Framingham Study.27
163854512006A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.83
163854512006A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.83

Citation

Dessen P

FAM13C (family with sequence similarity 13 member C)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54300/img/teaching-explorer/js/deep-insight-explorer/