SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)

2014-08-01  

Identity

HGNC
SNRNP40
LOCATION
1p35.2
LOCUSID
9410
ALIAS
40K,HPRP8BP,PRP8BP,PRPF8BP,SPF38,WDR57
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 9410
MIM: 607797
HGNC: 30857
Ensembl: ENSG00000060688

Variants:

dbSNP: 9410
ClinVar: 9410
TCGA: ENSG00000060688
COSMIC: SNRNP40

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000060688ENST00000263694Q96DI7
ENSG00000060688ENST00000263694A0MNP2
ENSG00000060688ENST00000373720Q9NSS8

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Spliceosome, 35S U5-snRNPKEGGhsa_M00355
Spliceosome, U4/U6.U5 tri-snRNPKEGGhsa_M00354
Spliceosome, U4/U6.U5 tri-snRNPKEGGM00354
Spliceosome, 35S U5-snRNPKEGGM00355
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163
mRNA Splicing - Minor PathwayREACTOMER-HSA-72165

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
370546262023Novel genetic variants linked to prelabor rupture of membranes among Chinese pregnant women.0
370546262023Novel genetic variants linked to prelabor rupture of membranes among Chinese pregnant women.0
271383362016Highly variable cancer subpopulations that exhibit enhanced transcriptome variability and metastatic fitness.67
271383362016Highly variable cancer subpopulations that exhibit enhanced transcriptome variability and metastatic fitness.67

Citation

Dessen P

SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54648/deep-insight-explorer/welcome