ARID5A (AT-rich interaction domain 5A)

2014-11-01  

Identity

HGNC
ARID5A
LOCATION
2q11.2
LOCUSID
10865
ALIAS
MRF-1,MRF1,RP11-363D14
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 10865
MIM: 611583
HGNC: 17361
Ensembl: ENSG00000196843

Variants:

dbSNP: 10865
ClinVar: 10865
TCGA: ENSG00000196843
COSMIC: ARID5A

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000196843ENST00000357485Q03989
ENSG00000196843ENST00000412735F6Q9D3
ENSG00000196843ENST00000454558Q03989

Expression (GTEx)

0
50
100
150
200
250
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
290445082018Differentially regulated gene expression in quiescence versus senescence and identification of ARID5A as a quiescence associated marker.6
290445082018Differentially regulated gene expression in quiescence versus senescence and identification of ARID5A as a quiescence associated marker.6
247821822014AT-rich-interactive domain-containing protein 5A functions as a negative regulator of retinoic acid receptor-related orphan nuclear receptor γt-induced Th17 cell differentiation.18
247821822014AT-rich-interactive domain-containing protein 5A functions as a negative regulator of retinoic acid receptor-related orphan nuclear receptor γt-induced Th17 cell differentiation.18

Citation

Dessen P

ARID5A (AT-rich interaction domain 5A)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/60487/css/lib/js/cancer-prone-explorer/