GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1)

2014-11-01 Affiliation

Identity

HGNC

GDPD1

LOCATION

17q22

LOCUSID

284161

ALIAS

GDE4

FUSION GENES

Show Gene Fusions

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 284161
MIM: 616317
HGNC: 20883
Ensembl: ENSG00000153982

Variants:

dbSNP: 284161
ClinVar: 284161
TCGA: ENSG00000153982
COSMIC: GDPD1

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000153982	ENST00000284116	Q8N9F7
ENSG00000153982	ENST00000578026	J3KTA9
ENSG00000153982	ENST00000579020	J3QQN7
ENSG00000153982	ENST00000579076	J3QRR6
ENSG00000153982	ENST00000581140	Q8N9F7
ENSG00000153982	ENST00000581276	Q8N9F7

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Pathways

Pathway	Source	External ID
Metabolism	REACTOME	R-HSA-1430728
Metabolism of lipids and lipoproteins	REACTOME	R-HSA-556833
Phospholipid metabolism	REACTOME	R-HSA-1483257
PI Metabolism	REACTOME	R-HSA-1483255
Glycerophospholipid catabolism	REACTOME	R-HSA-6814848

References

Pubmed ID	Year	Title	Citations
34673020	2021	Development of a selective fluorescence-based enzyme assay for glycerophosphodiesterase family members GDE4 and GDE7.	2
34673020	2021	Development of a selective fluorescence-based enzyme assay for glycerophosphodiesterase family members GDE4 and GDE7.	2
33022222	2020	Structural Variants Create New Topological-Associated Domains and Ectopic Retinal Enhancer-Gene Contact in Dominant Retinitis Pigmentosa.	48
33022222	2020	Structural Variants Create New Topological-Associated Domains and Ectopic Retinal Enhancer-Gene Contact in Dominant Retinitis Pigmentosa.	48
18991142	2008	Isolation, characterization and molecular 3D model of human GDE4, a novel membrane protein containing glycerophosphodiester phosphodiesterase domain.	6
18991142	2008	Isolation, characterization and molecular 3D model of human GDE4, a novel membrane protein containing glycerophosphodiester phosphodiesterase domain.	6
14612981	2003	A novel splice variant of human gene GDPD1 is mainly expressed in human ovary and small intestine.	1
14612981	2003	A novel splice variant of human gene GDPD1 is mainly expressed in human ovary and small intestine.	1

Citation

Dessen P

GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/63746/tumors-explorer/js/lib/deep-insight-explorer/