LRRC20 (leucine rich repeat containing 20)

2014-11-01  

Identity

HGNC
LRRC20
LOCATION
10q22.1
LOCUSID
55222
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 55222
HGNC: 23421
Ensembl: ENSG00000172731

Variants:

dbSNP: 55222
ClinVar: 55222
TCGA: ENSG00000172731
COSMIC: LRRC20

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000172731ENST00000355790Q8TCA0
ENSG00000172731ENST00000355790A0A024QZM2
ENSG00000172731ENST00000357631Q8TCA0
ENSG00000172731ENST00000357631A0A024QZR0
ENSG00000172731ENST00000358141Q8TCA0
ENSG00000172731ENST00000358141A0A024QZL5
ENSG00000172731ENST00000373224Q8TCA0
ENSG00000172731ENST00000373224A0A024QZM2
ENSG00000172731ENST00000395010A0A0A0MS58
ENSG00000172731ENST00000395011Q8TCA0
ENSG00000172731ENST00000395011A0A024QZL5
ENSG00000172731ENST00000446961X6RK58

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90
100
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
206593272010Trait-stratified genome-wide association study identifies novel and diverse genetic associations with serologic and cytokine phenotypes in systemic lupus erythematosus.64
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
206593272010Trait-stratified genome-wide association study identifies novel and diverse genetic associations with serologic and cytokine phenotypes in systemic lupus erythematosus.64
163854512006A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.83
163854512006A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.83

Citation

Dessen P

LRRC20 (leucine rich repeat containing 20)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/68600/css/lib/gene-fusions/cancer-prone-explorer/