PDXDC1 (pyridoxal dependent decarboxylase domain containing 1)

2014-11-01  

Identity

HGNC
PDXDC1
LOCATION
16p13.11
LOCUSID
23042
ALIAS
LP8165
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 23042
MIM: 614244
HGNC: 28995
Ensembl: ENSG00000179889

Variants:

dbSNP: 23042
ClinVar: 23042
TCGA: ENSG00000179889
COSMIC: PDXDC1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000179889ENST00000325823J3KNK7
ENSG00000179889ENST00000396410Q6P996
ENSG00000179889ENST00000450288Q6P996
ENSG00000179889ENST00000455313Q6P996
ENSG00000179889ENST00000535621Q86XE2
ENSG00000179889ENST00000562119H3BPV5
ENSG00000179889ENST00000563522H3BU11
ENSG00000179889ENST00000563667H3BQ54
ENSG00000179889ENST00000563679H3BND4
ENSG00000179889ENST00000565362H3BM88
ENSG00000179889ENST00000566426H3BQS3
ENSG00000179889ENST00000567306H3BNL6
ENSG00000179889ENST00000569715Q6P996
ENSG00000179889ENST00000627450Q6P996

Expression (GTEx)

0
50
100
150
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
326441452021Genome-wide analysis of high-risk primary brain cancer pedigrees identifies PDXDC1 as a candidate brain cancer predisposition gene.3
326441452021Genome-wide analysis of high-risk primary brain cancer pedigrees identifies PDXDC1 as a candidate brain cancer predisposition gene.3
284857322017Pdxdc1 modulates prepulse inhibition of acoustic startle in the mouse.10
284857322017Pdxdc1 modulates prepulse inhibition of acoustic startle in the mouse.10

Citation

Dessen P

PDXDC1 (pyridoxal dependent decarboxylase domain containing 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/71810/gene-fusions/cancer-prone-explorer/favicon/manifest.json