RCL1 (RNA terminal phosphate cyclase like 1)

2014-11-01 Affiliation

Identity

HGNC

RCL1

LOCATION

9p24.1

LOCUSID

10171

ALIAS

RNAC,RPCL1

FUSION GENES

Show Gene Fusions

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 10171
MIM: 611405
HGNC: 17687
Ensembl: ENSG00000120158

Variants:

dbSNP: 10171
ClinVar: 10171
TCGA: ENSG00000120158
COSMIC: RCL1

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000120158	ENST00000381728	Q9Y2P8
ENSG00000120158	ENST00000381730	Q9Y2P8
ENSG00000120158	ENST00000381732	Q5VYW8
ENSG00000120158	ENST00000381750	Q9Y2P8
ENSG00000120158	ENST00000441844	Q5VZU2
ENSG00000120158	ENST00000442869	Q5VZU3
ENSG00000120158	ENST00000448872	Q9Y2P8

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Pathways

Pathway	Source	External ID
Ribosome biogenesis in eukaryotes	KEGG	ko03008
Ribosome biogenesis in eukaryotes	KEGG	hsa03008
Gene Expression	REACTOME	R-HSA-74160
rRNA processing	REACTOME	R-HSA-72312
Major pathway of rRNA processing in the nucleolus and cytosol	REACTOME	R-HSA-6791226
rRNA modification in the nucleus and cytosol	REACTOME	R-HSA-6790901
rRNA processing in the nucleus and cytosol	REACTOME	R-HSA-8868773

References

Pubmed ID	Year	Title	Citations
28322274	2018	A rare missense variant in RCL1 segregates with depression in extended families.	14
28322274	2018	A rare missense variant in RCL1 segregates with depression in extended families.	14
20379614	2010	Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.	78
20379614	2010	Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.	78

Citation

Dessen P

RCL1 (RNA terminal phosphate cyclase like 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/72558/cancer-prone-explorer/case-report-explorer/