KMT2A-CBL Fusion Gene Resulting from del(11)(q23.3q23.3) Identified by Chromosome Microarray Analysis - second report in AML
2019-08-01 S Temenuzhka Boneva and Elisabeth Nacheva AffiliationHSL Analystics LLP OncoGenomics, London UK and UCL Cancer Institute, UK; [email protected]
Previous history
Preleukaemia
-
Malignant disease
-
Inborn condition
-
Clinics case report
Age
18 yrs
Sex
F
Liver
-
Spleen
-
Lymph nodes
-
Cns involv
-
Blood data
Wbc
1.3 (neut 0.1x109/L);
Hb
7.4
Platelets
55
Note
The marrow smears showed heavily infiltrated with medium sized cells, which are round, have minimal lightly basophilic agranular cytoplasm and inconspicuous nucleoli, with partially clumped nuclear chromatin. Some of the nuclei appear cleaved or folded. A minority of the cells has very immature chromatin and/or prominent nucleoli, and are more classically blasts. There are no Auer rods in either population. Very minimal evidence of maturing granulopoiesis and erythropoiesis is seen. Granulopoesis appears to have normal granulation. Erythropoiesis appears normoblastic and not grossly dysplastic. Some of the mature neutrophils appear dysplastic with abnormal nuclear stranding. Megakaryocytes are not seen.
Cyto path
Phenotype
AML with recurrent cytogenetic translocations
Immunophenotype
CD45lo/ SSClo blasts account for 61.2% of total BM intact single cells. Positive for: CD34, CD33, CD15, CD38, CD56, HLADR. By intracellular staining, these cells were entirely cCD34+ and 45% were cMPO+. These cells were negative for: TdT, cCD3- and cCD79a-.
Rearranged ig tcr
Not performed
Pathology
Not performed
Electron microscopy
Not performed
Precise diagnosis
Common Acute Myeloid Leukaemia.
Survival data
Date diagnosis
05-2017
Treatment
according to FLAG-Ida chemotherapy protocol.
Complete remission
+ Complete remission was obtained on 06/2017
Treatment relat death
-
Relapse
-
Status
A
Date last follow
08-2019
Survival
26
Karyotype
Sample
Bone marrow
Culture time
24
Banding
GTG
Results
46,XX[20] - All 20 G-banded metaphase cells analysed showed a female karyotype with no apparent cytogenetic abnormalities.
Karyotype relapse
Mol cytogenet technics
3. The target myeloid gene panel TruSight on a MiSeq platform (Illumina, USA) was used to screen mutational hotspots of 54 cancer-related genes relevant in myeloid malignancy as before (Boneva et al., 2017). Gene variances were reported at allele frequencies (VAF) >10% and at minimum read depth of 300 as per manufacturers criteria. We used the Catalogue of Somatic Mutations In Cancer (COSMIC), dbSNP and 1000 genome (>2%) to classify gene variants as either drivers, variants of unknown significance and/or germline polymorphisms (SNPs). Genome addresses are given according to hg19 (GRCH37).
Mol cytogenet results
Variants: The only mutation identified in this sample is a missense variance of the RUNX1 gene (NP_001745.2:p.Gly372Ser at 36164761) which is reported SNV which is predicted to be tolerated (http://cancer.sanger.ac and http://www.ncbi.nlm.nih. gov/SNP) and therefore considered indicative for disease only in the presence of cell morphology and immunophenotyping evidence (Genovese et al., 2014; Cargo et al., 2015 and reviewed in Steensma, 2018).
Images

Comments section
Comments
The presented case provides further support to the investigative power of CMA and a reminder for the existence of rare and possibly recurrent 5 KMT2A -3 CBL fusion gene in adult AML.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 26392596 | 2015 | Targeted sequencing identifies patients with preclinical MDS at high risk of disease progression. | Cargo CA et al |
| 29279377 | 2018 | Identification of fusion genes and characterization of transcriptome features in T-cell acute lymphoblastic leukemia. | Chen B et al |
| 12696071 | 2003 | Identification of CBL, a proto-oncogene at 11q23.3, as a novel MLL fusion partner in a patient with de novo acute myeloid leukemia. | Fu JF et al |
| 25426838 | 2014 | Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence. | Genovese G et al |
| 28701730 | 2018 | The MLL recombinome of acute leukemias in 2017. | Meyer C et al |
| 23521501 | 2013 | Does BCR/ABL1 positive acute myeloid leukaemia exist? | Nacheva EP et al |
| 30482770 | 2018 | Clinical consequences of clonal hematopoiesis of indeterminate potential. | Steensma DP et al |
Citation
S Temenuzhka Boneva and Elisabeth Nacheva
KMT2A-CBL Fusion Gene Resulting from del(11)(q23.3q23.3) Identified by Chromosome Microarray Analysis - second report in AML
Atlas Genet Cytogenet Oncol Haematol. 2019-08-01
