Inv(6)(p25q13) and gain of MYC gene in a case of chronic lymphocytic leukemia with complex karyotype
2026-04-22 Camila Galvano~Néstor Aznar~Natalia Oliveira~Carmen Stanganelli~Irma Slavutsky AffiliationInstituto de Medicina Experimental, CONICET-Academia Nacional de Medicina~Instituto de Medicina Experimental, CONICET-Academia Nacional de Medicina~Hospital Alejandro Posadas~Instituto de Investigaciones Hematológicas, Academia Nacional de Medicina~Insti
This chromosome aberration is
Peripheral blood
Sample(s) submitted for testing
Patient demographics
Clinical findings
Peripheral blood
Date of diagnosis: April 24, 2025
Adenopathy: Yes
Splenomegaly: Yes
B Symptoms: Yes
WBC (109/L): 304 (Lymphocytes: 80%)
Hemoglobin (g/dl): 11.2
Hematocrit: 34.2
Platelets (109/L): 136
LDH (UI/L): 626
B2M (µg/mL): 2.4
Albumin (mg/dL): 3.4
Immunophenotype: CD45+,CD19+d, CD20+d,CD5+,CD23+,CD38-,CD10-,CD200+.CD3-/+, lambda light chain restriction (dim)
Bone marrow biopsy: diffuse infiltration (95%) of small lymphoid cells co-expressing CD20, CD23 and CD5.
Conventional cytogenetics
Oligo DSP30 plus Pokeweed Mitogen
G-banding
45∼46,X,-Y,del(2)(p23),inv(6)(p25q13),+8,der(8)t(1;8)(q21;q24),del(10)(q24),del(14)(q24)[cp25]


Fish
OLE13q14 D13S319 - Negative
EN12 (centromeric 12)- Negative
OLE11q22 ATM - Negative
OLE17p13 TP53 - Negative
OBA14q32 IGH nuc ish (IGHx1) [87/100]
OBA 8q24 C-MYC nuc ish (MYCx3)[70/200]/(MYCx4)[20/200]
(LiVE-LEXEL, Argentina)

Molecular findings (ngs / pcr / rna-seq)
IGHV mutational status analysis:
Peripheral blood analysis of IGHV-IGHD-IGHJ regions performed by RT-PCR and bidirectional Sanger sequencing revealed an unmutated status (100% identity to germline) with an IGHV1-69*01, IGHD3-3*01 and IGHJ6*03 rearrangement.
Follow up
cyclophosphamide: July2, 2025 No response
rituximab + bendamustine: July 22, 2025 No response
Ibrutinib: November 3, 2025 Partial response
9 months
Conclusions and relevant comments
Chronic lymphocytic leukemia (CLL) is the most common form of adult leukemia in the Western world. The clinical course varies widely and is associated to a number of genetic alterations. Among them, complex karyotypes (CK), particularly those with ≥5 chromosome alterations (CAs) have demonstrated to have adverse prognosis, independently of other biomarkers.
We present a CLL patient at diagnosis who exhibit a very CK with both new and infrequent CAs and a clear clonal evolution. Interestingly, the patient showed one CA not previously described in CLL: der(8)t(1;8)(q21;q24) (Mitelman Database, 2025), and two abnormalities: inv(6)(p25q13) and del(2)(p23), which have been reported only once in this pathology, both as part of a CKs (Costa et al, 2022; Fleischman et al, 1989). In addition, we also found a del(10)(q24), previously observed in ten CLL cases, eight of them with CK, and del(14)(q24), a relatively common anomaly in this entity (Mitelman Database, 2025).
FISH analysis using the CLL panel did not find alterations, but the evaluation with the MYC Break Apart probe (OBA 8q24, LiVE-LEXEL, Argentina) showed 35% cells with three normal 8q24 signals, supporting the presence of trisomy 8 involving MYC gene gain. The literature shows 51 CLL patients with trisomy 8, 21.6% of them associated to structural chromosome 6 alterations (Mitelman Database, 2025). On the other hand, the presence of MYC gains is highly infrequent in CLL. It was observed in about 0.5% by chromosome banding and 3-4% by microarrays analysis (Haferlach et al 2007; Rinaldi et al, 2011; Brown et al, 2012), and was significantly associated to CKs and adverse prognosis (Rinaldi et al, 2011; Heerema et al, 2021; Nguyen-Khac, 2022).
Acknowledgements
This study was supported by grants from: CONICET (Consejo Nacional de Investigaciones Científicas y Técnicas) (PID Nº 1122015 0100753) and Fundación Florencio Fiorini, Buenos Aires, Argentina.
Article Bibliography
| Reference Number | Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|---|
| 1 | 22623730 | 2012 | Integrative genomic analysis implicates gain of PIK3CA at 3q26 and MYC at 8q24 in chronic lymphocytic leukemia. | Brown JR et al |
| 2 | 1 | 1975 | Formate assay in body fluids: application in methanol poisoning. | Makar AB et al |
| 3 | 34414624 | 2022 | Balanced and unbalanced translocations in a multicentric series of 2843 patients with chronic lymphocytic leukemia. | Costa D et al |
| 4 | 2737667 | 1989 | Chromosomal characteristics of malignant lymphoma. | Fleischman EW et al |
| 5 | 17805327 | 2007 | Comprehensive genetic characterization of CLL: a study on 506 cases analysed with chromosome banding analysis, interphase FISH, IgV(H) status and immunophenotyping. | Haferlach C et al |
| 6 | 32414849 | 2021 | Prognostic significance of translocations in the presence of mutated IGHV and of cytogenetic complexity at diagnosis of chronic lymphocytic leukemia. | Heerema NA et al |
| 7 | 35096627 | 2021 | "Double-Hit" Chronic Lymphocytic Leukemia, Involving the TP53 and MYC Genes. | Nguyen-Khac F et al |
| 8 | 21749360 | 2011 | Genome-wide DNA profiling better defines the prognosis of chronic lymphocytic leukaemia. | Rinaldi A et al |
Citation
Camila Galvano~Néstor Aznar~Natalia Oliveira~Carmen Stanganelli~Irma Slavutsky
Inv(6)(p25q13) and gain of MYC gene in a case of chronic lymphocytic leukemia with complex karyotype
Atlas Genet Cytogenet Oncol Haematol. 2026-04-22
Online version: http://atlasgeneticsoncology.org/case-report/209365
