Inv(6)(p25q13) and gain of MYC gene in a case of chronic lymphocytic leukemia with complex karyotype

2026-04-22  Camila Galvano~Néstor Aznar~Natalia Oliveira~Carmen Stanganelli~Irma Slavutsky

Instituto de Medicina Experimental, CONICET-Academia Nacional de Medicina~Instituto de Medicina Experimental, CONICET-Academia Nacional de Medicina~Hospital Alejandro Posadas~Instituto de Investigaciones Hematológicas, Academia Nacional de Medicina~Insti

This chromosome aberration is

This chromosome aberration is
Rare
Organ / tissue

Peripheral blood

Sample(s) submitted for testing

Sample(s) submitted for testing
Peripheral blood

Patient demographics

Sex
Male
Age
62

Clinical findings

Disease status
De novo / Primary
Specimen type / site of disease

Peripheral blood

Clinical presentation

Date of diagnosis: April 24, 2025

Adenopathy: Yes

Splenomegaly: Yes

B Symptoms: Yes


WBC (109/L): 304 (Lymphocytes: 80%)

Hemoglobin (g/dl): 11.2

Hematocrit: 34.2

Platelets (109/L): 136

LDH (UI/L): 626

B2M (µg/mL): 2.4

Albumin (mg/dL): 3.4

Immunophenotype:  CD45+,CD19+d, CD20+d,CD5+,CD23+,CD38-,CD10-,CD200+.CD3-/+, lambda light chain restriction (dim)


Pathologic findings

Bone marrow biopsy: diffuse infiltration (95%) of small lymphoid cells co-expressing CD20, CD23 and CD5. 

Conventional cytogenetics

Cultures set up
72h
Mitogen used
Yes
Mitogen type

Oligo DSP30 plus Pokeweed Mitogen

Banding used

G-banding

Karyotypic description

45∼46,X,-Y,del(2)(p23),inv(6)(p25q13),+8,der(8)t(1;8)(q21;q24),del(10)(q24),del(14)(q24)[cp25]

Provide karyogram




Fish

Fish phase
Interphase FISH
Describe probes used, chromosome location, and results

OLE13q14 D13S319 -  Negative

EN12 (centromeric 12)- Negative

OLE11q22 ATM - Negative

OLE17p13 TP53 - Negative

OBA14q32 IGH nuc ish (IGHx1) [87/100]

OBA 8q24 C-MYC nuc ish (MYCx3)[70/200]/(MYCx4)[20/200]

(LiVE-LEXEL, Argentina)

Provide fish image(s)

Molecular findings (ngs / pcr / rna-seq)

Describe results

  IGHV mutational status analysis:

Peripheral blood analysis of IGHV-IGHD-IGHJ regions performed by RT-PCR and bidirectional Sanger sequencing revealed an unmutated status (100% identity to germline) with an IGHV1-69*01, IGHD3-3*01 and IGHJ6*03 rearrangement.


Follow up

Treatment
Yes
Describe

cyclophosphamide: July2, 2025   No response

rituximab + bendamustine: July 22, 2025  No response

Ibrutinib:  November 3, 2025  Partial response

Complete remission achieved
No
Relapse
No
Duration of follow-up

9 months

Conclusions and relevant comments

Comments

   Chronic lymphocytic leukemia (CLL) is the most common form of adult leukemia in the Western world. The clinical course varies widely and is associated to a number of genetic alterations. Among them, complex karyotypes (CK), particularly those with ≥5 chromosome alterations (CAs) have demonstrated to have adverse prognosis, independently of other biomarkers.

We present a CLL patient at diagnosis who exhibit a very CK with both new and infrequent CAs and a clear clonal evolution. Interestingly, the patient showed one CA not previously described in CLL: der(8)t(1;8)(q21;q24) (Mitelman Database, 2025), and two abnormalities: inv(6)(p25q13) and del(2)(p23), which have been reported only once in this pathology, both as part of a CKs (Costa et al, 2022; Fleischman et al, 1989). In addition, we also found a del(10)(q24), previously observed in ten CLL cases, eight of them with CK, and del(14)(q24), a relatively common anomaly in this entity (Mitelman Database, 2025).

FISH analysis using the CLL panel did not find alterations, but the evaluation with the MYC Break Apart probe (OBA 8q24, LiVE-LEXEL, Argentina) showed 35% cells with three normal 8q24 signals, supporting the presence of trisomy 8 involving MYC gene gain. The literature shows 51 CLL patients with trisomy 8, 21.6% of them associated to structural chromosome 6 alterations (Mitelman Database, 2025). On the other hand, the presence of MYC gains is highly infrequent in CLL. It was observed in about 0.5% by chromosome banding and 3-4% by microarrays analysis (Haferlach et al 2007; Rinaldi et al, 2011; Brown et al, 2012), and was significantly associated to CKs and adverse prognosis (Rinaldi et al, 2011; Heerema et al, 2021; Nguyen-Khac, 2022).

Acknowledgements

This study was supported by grants from: CONICET (Consejo Nacional de Investigaciones Científicas y Técnicas) (PID Nº 1122015 0100753) and Fundación Florencio Fiorini, Buenos Aires, Argentina.

Article Bibliography

Reference NumberPubmed IDLast YearTitleAuthors
1226237302012Integrative genomic analysis implicates gain of PIK3CA at 3q26 and MYC at 8q24 in chronic lymphocytic leukemia.Brown JR et al
211975Formate assay in body fluids: application in methanol poisoning.Makar AB et al
3344146242022Balanced and unbalanced translocations in a multicentric series of 2843 patients with chronic lymphocytic leukemia.Costa D et al
427376671989Chromosomal characteristics of malignant lymphoma.Fleischman EW et al
5178053272007Comprehensive genetic characterization of CLL: a study on 506 cases analysed with chromosome banding analysis, interphase FISH, IgV(H) status and immunophenotyping.Haferlach C et al
6324148492021Prognostic significance of translocations in the presence of mutated IGHV and of cytogenetic complexity at diagnosis of chronic lymphocytic leukemia.Heerema NA et al
7350966272021"Double-Hit" Chronic Lymphocytic Leukemia, Involving the TP53 and MYC Genes.Nguyen-Khac F et al
8217493602011Genome-wide DNA profiling better defines the prognosis of chronic lymphocytic leukaemia.Rinaldi A et al

Citation

Camila Galvano~Néstor Aznar~Natalia Oliveira~Carmen Stanganelli~Irma Slavutsky

Inv(6)(p25q13) and gain of MYC gene in a case of chronic lymphocytic leukemia with complex karyotype

Atlas Genet Cytogenet Oncol Haematol. 2026-04-22

Online version: http://atlasgeneticsoncology.org/case-report/209365