NPM1 (nucleophosmin)
2001-08-01 Jean-Loup Huret   AffiliationGenetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France
Identity
HGNC
LOCATION
5q35.1
IMAGE

LEGEND
NPM1 (5q35) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics.
LOCUSID
ALIAS
B23,NPM
FUSION GENES
DNA/RNA
Description
11 exons on 25 kb;
Transcription
in a centromeric --> telomeric orientation; transcription is cell-cycle regulated, reaching peaks at G1/S transition and being baseline at S/G2 1.6 kb mRNA
Proteins

DNA Diagram
Description
294 amino acids, 32.5 kDa; contains in C-term an oligomerization domain (residues 1-83), a metal binding site (residues 104-115) , 2 domains rich in acidic amino acids (residues 120- 132 and 161-188) , and 2 nuclear localisation signals in C-term; forms homo-hexameres; binds to single and double strand nucleic acids
Expression
wide
Localisation
nuclear, mainly in the nucleolus
Function
RNA binding nucleolar phosphoprotein involved in preribosomal assembly; transport ribonucleoproteins between cellular compartments
Homology
with nucleoplasmin
Implicated in
Entity name
Disease
ALCL are high grade non Hodgkin lymphomas; ALK+ ALCL are ALCL where ALK is involved in a fusion gene; ALK+ ALCL represent 50 to 60 % of ALCL cases (they are CD30+, ALK+;); 80% of ALK+ ALCL cases bear a t(2;5)
Prognosis
nonetheless, a 80% five yr survival may be associated with this
anomaly
Cytogenetics
additional anomalies are most often found
Hybrid gene
5 NPM1-3 ALK on der(5)
Fusion protein
680 amino acids, 80 kDa; N-term 116 amino acids from NPM1 fused to the 563 C-term aminoacids of ALK (i.e. composed of the oligomerization domain and the metal binding site of NPM1 ,and the entire cytoplasmic portion of ALK); no apparent expression of the ALK/NPM1 counterpart; Characteristic localisation both in the cytoplasm and in the nucleus, due to heterooligomerization of NPM-ALK and normal NPM whereas the normal NPM protein is confined to the nucleus; constitutive activation of the catalytic domain of ALK.
Oncogenesis
via the kinase function activated by oligomerization of NPM1-ALK mediated by the NPM1 part
Entity name
Disease
Acute non lymphocytic leukemia (AML), myelodysplasia (MDS), chronic myelogenous leukemia in blast crisis (BC-CML); trilineage involvement
Prognosis
very poor
Cytogenetics
location of breakpoints difficult to ascertain
Hybrid gene
5 NPM-3 MLF1 on der(5)
Fusion protein
with the 175 N term amino acids of NPM1; nuclear protein
Entity name
Disease
promyelocytic AML (M3-AML)
Cytogenetics
variant translocation of the well known t(15;17)
Hybrid gene
5 NPM1-3 RARa on der(5)
Fusion protein
with the 117 N term amino acids of NPM1
Breakpoints


Note
within the 4th intron in the cases of t(2;5) or t(5;17), within the 6th intron in case of t(3;5)
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 9121481 | 1997 | Role of the nucleophosmin (NPM) portion of the non-Hodgkin's lymphoma-associated NPM-anaplastic lymphoma kinase fusion protein in oncogenesis. | Bischof D et al |
| 9092633 | 1997 | Isolation and characterization of the human nucleophosmin/B23 (NPM) gene: identification of the YY1 binding site at the 5' enhancer region. | Chan PK et al |
| 10994999 | 2000 | Pathobiology of NPM-ALK and variant fusion genes in anaplastic large cell lymphoma and other lymphomas. | Drexler HG et al |
| 8122112 | 1994 | Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma. | Morris SW et al |
| 11380391 | 2001 | Alk+ CD30+ lymphomas: a distinct molecular genetic subtype of non-Hodgkin's lymphoma. | Morris SW et al |
| 8562957 | 1996 | The t(5;17) variant of acute promyelocytic leukemia expresses a nucleophosmin-retinoic acid receptor fusion. | Redner RL et al |
| 11090048 | 2000 | CD30(+) anaplastic large cell lymphoma: a review of its histopathologic, genetic, and clinical features. | Stein H et al |
| 8570204 | 1996 | The t(3;5)(q25.1;q34) of myelodysplastic syndrome and acute myeloid leukemia produces a novel fusion gene, NPM-MLF1. | Yoneda-Kato N et al |
Other Information
Locus ID:
NCBI: 4869
MIM: 164040
HGNC: 7910
Ensembl: ENSG00000181163
Variants:
dbSNP: 4869
ClinVar: 4869
TCGA: ENSG00000181163
COSMIC: NPM1
RNA/Proteins
Expression (GTEx)
Pathways
Protein levels (Protein atlas)
PharmGKB
| Entity ID | Name | Type | Evidence | Association | PK | PD | PMIDs |
|---|---|---|---|---|---|---|---|
| PA166153473 | venetoclax | Chemical | LabelAnnotation | associated | |||
| PA166169917 | midostaurin | Chemical | LabelAnnotation | associated |
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 36944324 | 2024 | NPM1-Mutated Acute Myeloid Leukemia: Recent Developments and Open Questions. | 2 |
| 38000524 | 2024 | The acetylation of STAT3 at K685 attenuates NPM-ALK-induced tumorigenesis. | 0 |
| 38029539 | 2024 | Pumilio1 regulates NPM3/NPM1 axis to promote PD-L1-mediated immune escape in gastric cancer. | 0 |
| 38164189 | 2024 | MANF Promotes Unexplained Recurrent Miscarriages by Interacting with NPM1 and Downregulating Trophoblast Cell Migration and Invasion. | 1 |
| 38170740 | 2024 | Mutations highly specific for secondary AML are associated with poor outcomes in ELN favorable risk NPM1-mutated AML. | 1 |
| 38287009 | 2024 | AURKA inhibition induces Ewing's sarcoma apoptosis and ferroptosis through NPM1/YAP1 axis. | 3 |
| 38382671 | 2024 | ZNF692 regulates nucleolar morphology by interacting with NPM1 and modifying its self-assembly properties. | 0 |
| 38390737 | 2024 | Targeting NPM1 Epigenetically Promotes Postinfarction Cardiac Repair by Reprogramming Reparative Macrophage Metabolism. | 2 |
| 38612443 | 2024 | Comprehensive Molecular Profiling of NPM1-Mutated Acute Myeloid Leukemia Using RNAseq Approach. | 0 |
| 38702038 | 2024 | Phosphorylation Code of Human Nucleophosmin Includes Four Cryptic Sites for Hierarchical Binding of 14-3-3 Proteins. | 0 |
| 36944324 | 2024 | NPM1-Mutated Acute Myeloid Leukemia: Recent Developments and Open Questions. | 2 |
| 38000524 | 2024 | The acetylation of STAT3 at K685 attenuates NPM-ALK-induced tumorigenesis. | 0 |
| 38029539 | 2024 | Pumilio1 regulates NPM3/NPM1 axis to promote PD-L1-mediated immune escape in gastric cancer. | 0 |
| 38164189 | 2024 | MANF Promotes Unexplained Recurrent Miscarriages by Interacting with NPM1 and Downregulating Trophoblast Cell Migration and Invasion. | 1 |
| 38170740 | 2024 | Mutations highly specific for secondary AML are associated with poor outcomes in ELN favorable risk NPM1-mutated AML. | 1 |
Citation
Jean-Loup Huret
NPM1 (nucleophosmin)
Atlas Genet Cytogenet Oncol Haematol. 2001-08-01
Online version: http://atlasgeneticsoncology.org/gene/22/npm1
Historical Card
1997-12-01 NPM1 (nucleophosmin) by Jean-Loup Huret  Affiliation
Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France
