CDH13 (cadherin 13, H-cadherin (heart))

2011-03-01   Tamotsu Takeuchi  

Department of Pathology, Kochi Medical School, Kohasu, Okou, Nankoku, Kochi 783 8505, Japan

Identity

HGNC
LOCATION
16q23.3
LOCUSID
ALIAS
CDHH,P105
FUSION GENES

DNA/RNA

Note

Promoter region of CDH13 is CpG rich and often hypermethylated in various malignant tumors, i.e. breast, lung, colorectal, skin, ovary, chronic myeloid leukemia, and more.
Atlas Image
DNA of CDH13 gene composed of 14 coding exons.

Transcription

3828 bp mRNA; 2145 bp open reading frame.

Pseudogene

Not yet reported.

Proteins

Atlas Image
Schematic representation of CDH13 protein. SP: signal peptide sequence, EC: extracellular cadherin repeat, GPI: glycosylphosphatidylinositol anchor.

Description

713 amino acids.
Unlike classical cadherin molecules, CDH13 lacks a transmembrane domain or cytoplasmic region, and is anchored to surface membrane via glycosylphosphatidylinositol anchor. The extracellular domain of CDH13 shows significant homology with other cadherins; however, CDH13 EC1 lacks many amino acids crucial for the adhesive functions.
CDH13 lacks intracellular domain, which is believed to be critical for homophilic adhesion of other classical cadherins.

Expression

Heart, skeletal muscle, brain, bone (osteoblast), epidermal basal cell, endothelial cell (tumor vessel, active remodeling vascule).
Controversial experiments and arguments exist for the expression in the liver, hepatocyte.

Localisation

Cell surface membrane, lipid raft (cytoplasmic and nuclear localization are also reported).

Function

CDH13 is believed to have diverse functions.
1. Adiponectin receptor. CDH13 binds to the hexameric and larger adiponectin, an insulin-sensitizing hormone, which is secreted by adipocytes.
2. Homophilic adhesion. Unlike other classical cadherins, which have the strong homophilic adhesion function, EC1 domain of CDH13 lacks many amino acids crucial for the adhesive functions. Instead CDH13 is thought to form dimers through the non-swapped interface near the EC1-EC2 calcium binding site.
3. Tumor suppressor function. Especially against cancer invasion; however, the exact molecular mechanism which is responsible for inhibiting cancer progression still remains unclear.
4. Angiogenesis. CDH13 facilitates tumor neovascularization. In tumor microenvironment, CDH13 may recruit adiponectin to sequester various growth factors to assist the tumor associated angiogenesis.

Homology

CDH1 (approximately 38%).

Mutations

Note

Silencing of CDH13 expression is often found in various malignant tumors. Hypermethylation of the promoter region is the major molecular mechanism for loss of CDH13 expression.
Genomic mutation is little reported.

Implicated in

Entity name
Various malignant tumors, i.e. breast, lung, colorectal, skin, ovary and chronic myeloid leukemia
Note
Expression of CDH13 is downregulated by the aberrant methylation of the promoter region of CDH13 gene. On the other hand, CDH13 is over-expressed in tumor vascular endothelial cells and thought to support the neoangiogenesis.

Bibliography

Pubmed IDLast YearTitleAuthors

Other Information

Locus ID:

NCBI: 1012
MIM: 601364
HGNC: 1753
Ensembl: ENSG00000140945

Variants:

dbSNP: 1012
ClinVar: 1012
TCGA: ENSG00000140945
COSMIC: CDH13

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000140945ENST00000268613P55290
ENSG00000140945ENST00000428848P55290
ENSG00000140945ENST00000431540P55290
ENSG00000140945ENST00000539548F5H7W7
ENSG00000140945ENST00000562601H3BQH4
ENSG00000140945ENST00000565636P55290
ENSG00000140945ENST00000567109P55290
ENSG00000140945ENST00000567445H3BRL7
ENSG00000140945ENST00000568770H3BTF2
ENSG00000140945ENST00000569144H3BV21

Expression (GTEx)

0
50
100
150

Pathways

PathwaySourceExternal ID
Cell-Cell communicationREACTOMER-HSA-1500931
Cell junction organizationREACTOMER-HSA-446728
Cell-cell junction organizationREACTOMER-HSA-421270
Adherens junctions interactionsREACTOMER-HSA-418990

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
364824942023Hsa_circ_0000119 promoted ovarian cancer development via enhancing the methylation of CDH13 by sponging miR-142-5p.1
364824942023Hsa_circ_0000119 promoted ovarian cancer development via enhancing the methylation of CDH13 by sponging miR-142-5p.1
339726912022Cadherin-13 is a critical regulator of GABAergic modulation in human stem-cell-derived neuronal networks.28
339726912022Cadherin-13 is a critical regulator of GABAergic modulation in human stem-cell-derived neuronal networks.28
326912792021CDH13 and LPHN3 Gene Polymorphisms in Attention-Deficit/Hyperactivity Disorder: Their Relation to Clinical Characteristics.2
332421562021The immunohistochemical expression of von Willebrand factor, T-cadherin, and Caveolin-1 is increased in kidney allograft biopsies with antibody-mediated injury.1
334074342021Interactive association between dietary fat and sex on CDH13 cg02263260 methylation.2
335395222021Identification and Clinical Associations of 3 Forms of Circulating T-cadherin in Human Serum.3
338188272021microRNA-377-3p downregulates the oncosuppressor T-cadherin in colorectal adenocarcinoma cells.4
345733372021A Common CDH13 Variant Is Associated with Low Agreeableness and Neural Responses to Working Memory Tasks in ADHD.5
346809772021Genome-Wide Association Study on Adiponectin-Mediated Suppression of HDL-C Levels in Taiwanese Individuals Identifies Functional Haplotypes in CDH13.1
347594452021Association of CDH13 Gene Polymorphism and Metabolic Syndrome in Gambian Population.0
347985572021Revisiting the multiple roles of T-cadherin in health and disease.6
326912792021CDH13 and LPHN3 Gene Polymorphisms in Attention-Deficit/Hyperactivity Disorder: Their Relation to Clinical Characteristics.2
332421562021The immunohistochemical expression of von Willebrand factor, T-cadherin, and Caveolin-1 is increased in kidney allograft biopsies with antibody-mediated injury.1

Citation

Tamotsu Takeuchi

CDH13 (cadherin 13, H-cadherin (heart))

Atlas Genet Cytogenet Oncol Haematol. 2011-03-01

Online version: http://atlasgeneticsoncology.org/gene/40018/css/lib/tumors-explorer/js/_common.js