LRIG1 (leucine-rich repeats and immunoglobulin-like domains 1)

2010-12-01   Dongsheng Guo  , Baofeng Wang  

Dept of Neurosurgery, Tongji Hospital, Huazhong University of Science, Technology, Wuhan, Hubei, 430030, Peoples Republic of China

Identity

HGNC
LOCATION
3p14.1
LOCUSID
ALIAS
LIG-1,LIG1
FUSION GENES

DNA/RNA

Atlas Image
LRIG1 gene. Exons are represented by red boxes (in scale). Exons 1 to 19 are from the 5 to 3 direction.

Description

Genomic DNA encoding LRIG1 spans a region of 122.89 kilobases on chromosome 3, at 3p14. LRIG1 gene is encoded on the reverse strand.

Transcription

The pre-mRNA comprises 19 exons.
Coding sequence: 4812 bp.

Proteins

Atlas Image
LRIG1 protein. SP: signal peptide; NF: N-terminal cysteine-rich flanking domain; LRR: leucine-rich repeat; CF: C-terminal cysteine-rich flanking domain; Ig C2: C2-type immunoglobulin-like domains; TM: transmembrane domain; Cyto: cytoplasmic domain.

Description

LRIG1 is a transmembrane cell-surface protein consisting of 1093 amino acids. LRIG1 contains extracellular part containing 15 leucine-rich repeats (LRR) and three C2-type immunoglobulin-like domains, a transmembrane region, and a cytoplasmic tail. LRIG1 can be cut into soluble LRIG1 ectodomain by proteolytic processing, which also is a functional molecule.

Expression

LRIG1 is expressed ubiquitously in various epithelial cells, endothelial cells, heart, smooth and striated muscles, and in large neurons.

Localisation

Differential subcellular distribution in a cell type-specific manner.

Function

LRIG1 acts as a suppressor of receptor tyrosine kinases, such as epidermal growth factor receptor (EGFR) family, MET (hepatocyte growth factor receptor), and RET. The interaction of the extracellular LRR domain and immunoglobulin-like domains of LRIG1 with the extracellular parts of the human EGFR results in recruitment of c-Cbl to the cytoplasmic domains, and induction of EGFR degradation. LRIG1 is involved in signal transduction, cell proliferation, cell apopotosis, cell cycle, cell migration, and cell invasion. LRIG1 as a putative tumor suppressor gene often be down-regulated in various human tumors.
Soluble ectodomain of LRIG1 protein can modulate EGFR signaling and its growth-promoting activity in a paracrine fashion.

Implicated in

Entity name
Ependymoma
Note
Higher cytoplasmic immunoreactivity of LRIG1 correlates with older patient age and higher LRIG1 nuclear immunoreactivity with lower WHO grade.
Entity name
Prostate cancer
Note
High LRIG1 expression is significantly associated with short overall and prostate cancer-specific survival for 256 Swedish patients analysed. In contrast, in the U.S. series, high LRIG1 expression is significantly associated with longer overall survival.
Entity name
Renal cell carcinoma (RCC)
Note
LRIG1 expression is generally downregulated in conventional and papillary RCC but not in chromophobic RCC.
Entity name
Cutaneous squamous cell carcinoma (SCC)
Note
LRIG-1 expression is highest in well-differentiated lesions of cutaneous SCC. LRIG-1 expression intensity of tumor cells is significantly correlated with histologic differentiation of SCC. The SCC patients have significant survival benefits in the high LRIG-1 expression groups compared with low LRIG-1 expression groups.
Entity name
Breast tumor
Note
LRIG1 protein levels are significantly suppressed in the majority of human breast tumors expressing ErbB2.
Entity name
Cervical squamous cell carcinoma
Note
LRIG1 appears to be a significant prognosis predictor in early-stage cervical cancer, independent of the other tumor markers.
Entity name
Astrocytic tumor
Note
Perinuclear staining of LRIG1 is associated with low WHO grade and better survival of the patients.
Entity name
Psoriasis
Note
In psoriasis, LRIG1 is mostly absent from the cell surfaces in the spinous layers.

Bibliography

Pubmed IDLast YearTitleAuthors

Other Information

Locus ID:

NCBI: 26018
MIM: 608868
HGNC: 17360
Ensembl: ENSG00000144749

Variants:

dbSNP: 26018
ClinVar: 26018
TCGA: ENSG00000144749
COSMIC: LRIG1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000144749ENST00000273261Q96JA1
ENSG00000144749ENST00000383703Q96JA1

Expression (GTEx)

0
50
100
150

Pathways

PathwaySourceExternal ID
Signal TransductionREACTOMER-HSA-162582
Signaling by EGFRREACTOMER-HSA-177929
Signaling by METREACTOMER-HSA-6806834
Negative regulation of MET activityREACTOMER-HSA-6807004

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
384545072024Dysregulation and antimetastatic function of circLRIG1 modulated by miR-214-3p/LRIG1 axis in bladder carcinoma.0
384545072024Dysregulation and antimetastatic function of circLRIG1 modulated by miR-214-3p/LRIG1 axis in bladder carcinoma.0
383762912023Leucine-rich repeats and immunoglobulin-like domains protein 1 (LRIG1) is downregulated in Invasive ductal carcinoma and potential prognostic marker of breast cancer.0
383762912023Leucine-rich repeats and immunoglobulin-like domains protein 1 (LRIG1) is downregulated in Invasive ductal carcinoma and potential prognostic marker of breast cancer.0
354406692022Aberrant promoter methylation contributes to LRIG1 silencing in basal/triple-negative breast cancer.6
354406692022Aberrant promoter methylation contributes to LRIG1 silencing in basal/triple-negative breast cancer.6
334691512021LRIG proteins regulate lipid metabolism via BMP signaling and affect the risk of type 2 diabetes.9
337869872021The transmembrane protein LRIG1 triggers melanocytic tumor development following chemically induced skin carcinogenesis.2
338932452021microRNA-1246-containing extracellular vesicles from acute myeloid leukemia cells promote the survival of leukemia stem cells via the LRIG1-meditated STAT3 pathway.12
339479592021LRIG1 is a conserved EGFR regulator involved in melanoma development, survival and treatment resistance.5
341517942021Potential Novel Genes for Late-Onset Alzheimer's Disease in East-Asian Descent Identified by APOE-Stratified Genome-Wide Association Study.17
343315692021LRIG1 is a positive prognostic marker in Merkel cell carcinoma and Merkel cell carcinoma expresses epithelial stem cell markers.5
345761522021Aryl Hydrocarbon Receptor Defect Attenuates Mitogen-Activated Signaling through Leucine-Rich Repeats and Immunoglobulin-like Domains 1 (LRIG1)-Dependent EGFR Degradation.1
334691512021LRIG proteins regulate lipid metabolism via BMP signaling and affect the risk of type 2 diabetes.9
337869872021The transmembrane protein LRIG1 triggers melanocytic tumor development following chemically induced skin carcinogenesis.2

Citation

Dongsheng Guo ; Baofeng Wang

LRIG1 (leucine-rich repeats and immunoglobulin-like domains 1)

Atlas Genet Cytogenet Oncol Haematol. 2010-12-01

Online version: http://atlasgeneticsoncology.org/gene/41198/deep-insight-explorer/img/logo-atlas-4.svg