NOTCH3 (Notch homolog 3 (Drosophila))

2007-08-01   Tian-Li Wang 

Departments of Gynecology\\\/Obstetrics, Oncology Johns Hopkins Medical Institutions CRBII, Rm: 306 1550 Orleans Street Baltimore, MD 21231, USA

Identity

HGNC
LOCATION
19p13.12
LOCUSID
ALIAS
CADASIL,CADASIL1,CASIL,IMF2,LMNS
FUSION GENES

DNA/RNA

Description

The Notch3 gene is encoded by 33 exons spanning 41.35 kb that are located on Chromosome 19p13.12.

Transcription

8.089 Kb mRNA, the coding sequence is from 77 bp-7042 bp.

Proteins

Note

2321 amino acids with a predicted molecular mass of 243.66 Kd.
Single-pass type I membrane protein. Contain 1 signal peptide, 36 extracellular EGF repeats, 1 single transmembrane domain, and 2 PEST domains.
Synthesized in the endoplasmic reticulum as an inactive form, which is cleaved by a furin-like convertase in the trans-Golgi complex before it reaches the plasma membrane to yield an active, ligand-accessible form. Cleavage results in a transmembrane Notch subunit (NTM) and an extracellular Notch subunit (ECN).

Description

Notch3 is a cell surface receptor for membrane-bound ligands including Jagged1, Jagged2, Delta-like1, Delta-like3 and Delta-like4. It is activated by ligand-receptor interaction, which triggers two successive proteolytic cleavages that release the active intracellular domain of Notch (NICD). The NICD translocates to the nucleus, where it interacts with CSL (CBF1/RBP-J kappa, Suppressor of Hairless, LAG-1). Binding of NICD to CSL displaces corepressor complexes and recruits coactivators, leading to transcription from promoters containing CSL-binding elements. The Notch3 target genes participate in wide spectrum of biological processes such as differentiation, proliferation and apoptosis.

Expression

Expressed in certain types of fetal and adult tissues.

Localisation

Mainly located at cell membrane. Following proteolytic events upon ligand binding, its intracellular domain is translocated into the nuclei.

Function

Notch3 is a membrane receptor that mediates cell-cell interactions to facilitate cell differentiation, growth and cell death.

Mutations

Germinal

Mutation in NOTCH3 is associated with cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL). CADASIL is an adult-onset disorder characterized by recurrent ischemic strokes, dementia, and premature death. It affects predominantly the small cerebral arteries, leads to progressive degeneration of vasculature smooth-muscle cells.
Disease-associated mutations are distributed throughout the epidermal growth factor-like repeats (EGFRs) that compose the extracellular domain of the Notch3 receptor and result in a loss or a gain of a cysteine residue in one of these EGFRs. Mutation hotspots were located at the two exons encoding the first five EGFRs. The findings suggested that aberrant dimerization of NOTCH3, due to abnormal disulfide bridging with NOTCH3 molecule or another protein, may be involved in the pathogenesis of CADASIL.

Somatic

Somatic sequence mutations, gene translocation and amplification of chromosomal locus involved Notch3 gene were identified in T-cell lymphoma, non-small-cell lung cancer and ovarian cancer, respectively.

Implicated in

Entity name
Non-small-cell lung cancer
Cytogenetics
t(15;19)(q11;p13)
Hybrid gene
A breakpoint was localized to the cosmid R31546. The breakpoint was found about 50 kilobases (kb) upstream of the Notch3 and within the 3 untranslated region of a putative gene, Hunk1, on 19p. Translocation of chromosome 19p was also found in several other chromosomes, including chromosomes 12q, 14q, 17q, 4q, and 6q. Overexpression of Notch3 full-length mRNA is associated with a 19p translocation.
Oncogenesis
The translocation is associated with Notch3 over-expression. Transgenic mouse study by constitutive expression of intracellular domain of Notch3 in lung epithelium using surfactant protein C promoter/enhancer resulted in inhibited differentiation of epithelial lung cell, altered lung morphology, and perinatal lethality in the transgenic mice.
Entity name
Ovarian cancer-serous type
Cytogenetics
Chromosome 19p13.12 amplification harboring the Notch3 gene is frequently identified in ovarian cancer.
Oncogenesis
In vitro study demonstrated that cell lines with Notch3 over-expression are more sensitive to the anti-proliferative effect of Notch3 signaling pathway inhibitors including gamma-secretase inhibitor and Notch3-specific siRNA.

Bibliography

Pubmed IDLast YearTitleAuthors
126732042003Constitutive activation of Notch3 inhibits terminal epithelial differentiation in lungs of transgenic mice.Dang TP et al
109445592000Chromosome 19 translocation, overexpression of Notch3, and human lung cancer.Dang TP et al
167782082006Notch3 gene amplification in ovarian cancer.Park JT et al

Other Information

Locus ID:

NCBI: 4854
MIM: 600276
HGNC: 7883
Ensembl: ENSG00000074181

Variants:

dbSNP: 4854
ClinVar: 4854
TCGA: ENSG00000074181
COSMIC: NOTCH3

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000074181ENST00000263388Q9UM47
ENSG00000074181ENST00000595514M0QZN3
ENSG00000074181ENST00000597756M0QX38
ENSG00000074181ENST00000601011M0R3C9

Expression (GTEx)

0
50
100
150
200
250
300
350
400
450

Pathways

PathwaySourceExternal ID
Dorso-ventral axis formationKEGGko04320
Notch signaling pathwayKEGGko04330
Notch signaling pathwayKEGGhsa04330
Dorso-ventral axis formationKEGGhsa04320
MicroRNAs in cancerKEGGhsa05206
MicroRNAs in cancerKEGGko05206
Thyroid hormone signaling pathwayKEGGhsa04919
Notch signalingKEGGhsa_M00682
Notch signalingKEGGM00682
DiseaseREACTOMER-HSA-1643685
Diseases of glycosylationREACTOMER-HSA-3781865
Signal TransductionREACTOMER-HSA-162582
Signaling by NOTCHREACTOMER-HSA-157118
Pre-NOTCH Expression and ProcessingREACTOMER-HSA-1912422
Pre-NOTCH Transcription and TranslationREACTOMER-HSA-1912408
Pre-NOTCH Processing in the Endoplasmic ReticulumREACTOMER-HSA-1912399
Pre-NOTCH Processing in GolgiREACTOMER-HSA-1912420
Signaling by NOTCH3REACTOMER-HSA-1980148
Gene ExpressionREACTOMER-HSA-74160
Generic Transcription PathwayREACTOMER-HSA-212436
Notch-HLH transcription pathwayREACTOMER-HSA-350054
Diseases associated with O-glycosylation of proteinsREACTOMER-HSA-3906995
Defective LFNG causes SCDO3REACTOMER-HSA-5083630
Endocrine resistanceKEGGko01522
Endocrine resistanceKEGGhsa01522
Breast cancerKEGGko05224
Breast cancerKEGGhsa05224
Th1 and Th2 cell differentiationKEGGko04658
Th1 and Th2 cell differentiationKEGGhsa04658
Apelin signaling pathwayKEGGhsa04371

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
180600362007IL-6 triggers malignant features in mammospheres from human ductal breast carcinoma and normal mammary gland.290
211189652010Aldehyde dehydrogenase activity selects for lung adenocarcinoma stem cells dependent on notch signaling.159
178047162007Gamma-secretase inhibitor prevents Notch3 activation and reduces proliferation in human lung cancers.124
191508862009NOTCH3 expression is induced in mural cells through an autoregulatory loop that requires endothelial-expressed JAGGED1.117
230195852012Targeting Notch, a key pathway for ovarian cancer stem cells, sensitizes tumors to platinum therapy.112
198554002009Notch3 signaling promotes the development of pulmonary arterial hypertension.103
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85
171582372007p66Shc/Notch-3 interplay controls self-renewal and hypoxia survival in human stem/progenitor cells of the mammary gland expanded in vitro as mammospheres.79
215512312011Modulation of microRNA expression in human T-cell development: targeting of NOTCH3 by miR-150.77
234442122013Notch pathway activity identifies cells with cancer stem cell-like properties and correlates with worse survival in lung adenocarcinoma.72

Citation

Tian-Li Wang

NOTCH3 (Notch homolog 3 (Drosophila))

Atlas Genet Cytogenet Oncol Haematol. 2007-08-01

Online version: http://atlasgeneticsoncology.org/gene/41557/notch3-(notch-homolog-3-(drosophila))