SETMAR (SET domain and mariner transposase fusion gene)

2007-02-01   Dessen P  

Identity

HGNC
SETMAR
LOCATION
3p26.1
LOCUSID
6419
ALIAS
METNASE,Mar1
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 6419
MIM: 609834
HGNC: 10762
Ensembl: ENSG00000170364

Variants:

dbSNP: 6419
ClinVar: 6419
TCGA: ENSG00000170364
COSMIC: SETMAR

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000170364ENST00000358065Q53H47
ENSG00000170364ENST00000358950B9ZVV8
ENSG00000170364ENST00000413809F8WEU1
ENSG00000170364ENST00000425046F8WB33
ENSG00000170364ENST00000425863Q53H47
ENSG00000170364ENST00000430981Q53H47

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Lysine degradationKEGGko00310
Lysine degradationKEGGhsa00310

References

Pubmed IDYearTitleCitations
367063142023Investigating the Expression Pattern of the SETMAR Gene Transcript Variants in Childhood Acute Leukemia: Revisiting an Old Gene.0
367063142023Investigating the Expression Pattern of the SETMAR Gene Transcript Variants in Childhood Acute Leukemia: Revisiting an Old Gene.0
353781292022Structural and genome-wide analyses suggest that transposon-derived protein SETMAR alters transcription and splicing.0
353781292022Structural and genome-wide analyses suggest that transposon-derived protein SETMAR alters transcription and splicing.0
336219192021Mutation and expression alterations of histone methylation-related NSD2, KDM2B and SETMAR genes in colon cancers.5
338128982021Two repeated motifs enriched within some enhancers and origins of replication are bound by SETMAR isoforms in human colon cells.5
336219192021Mutation and expression alterations of histone methylation-related NSD2, KDM2B and SETMAR genes in colon cancers.5
338128982021Two repeated motifs enriched within some enhancers and origins of replication are bound by SETMAR isoforms in human colon cells.5
303290852019Human SETMAR is a DNA sequence-specific histone-methylase with a broad effect on the transcriptome.17
312382952019The roles of the human SETMAR (Metnase) protein in illegitimate DNA recombination and non-homologous end joining repair.9
303290852019Human SETMAR is a DNA sequence-specific histone-methylase with a broad effect on the transcriptome.17
312382952019The roles of the human SETMAR (Metnase) protein in illegitimate DNA recombination and non-homologous end joining repair.9
279744602017Metnase Mediates Loading of Exonuclease 1 onto Single Strand Overhang DNA for End Resection at Stalled Replication Forks.14
280384632017SETMAR isoforms in glioblastoma: A matter of protein stability.9
279744602017Metnase Mediates Loading of Exonuclease 1 onto Single Strand Overhang DNA for End Resection at Stalled Replication Forks.14

Citation

Dessen P

SETMAR (SET domain and mariner transposase fusion gene)

Atlas Genet Cytogenet Oncol Haematol. 2007-02-01

Online version: http://atlasgeneticsoncology.org/gene/43714/setmar-(set-domain-and-mariner-transposase-fusion-gene)