PHGDH (phosphoglycerate dehydrogenase)

2011-10-01  

Identity

HGNC
LOCATION
1p12
LOCUSID
ALIAS
3-PGDH,3PGDH,HEL-S-113,NLS,NLS1,PDG,PGAD,PGD,PGDH,PHGDHD,SERA
FUSION GENES

Other Information

Locus ID:

NCBI: 26227
MIM: 606879
HGNC: 8923
Ensembl: ENSG00000092621

Variants:

dbSNP: 26227
ClinVar: 26227
TCGA: ENSG00000092621
COSMIC: PHGDH

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000092621ENST00000369409A0A2C9F2M7
ENSG00000092621ENST00000493622A0A286YFE1
ENSG00000092621ENST00000641023O43175
ENSG00000092621ENST00000641074A0A286YFL2
ENSG00000092621ENST00000641115A0A286YFA2
ENSG00000092621ENST00000641213A0A286YFB2
ENSG00000092621ENST00000641247A0A286YER3
ENSG00000092621ENST00000641272A0A286YFM8
ENSG00000092621ENST00000641371A0A286YFK5
ENSG00000092621ENST00000641375A0A286YFB2
ENSG00000092621ENST00000641491A0A286YFB2
ENSG00000092621ENST00000641513A0A286YFB2
ENSG00000092621ENST00000641570A0A286YFC8
ENSG00000092621ENST00000641587A0A286YFF3
ENSG00000092621ENST00000641597O43175
ENSG00000092621ENST00000641720A0A286YF34
ENSG00000092621ENST00000641756A0A286YEZ0
ENSG00000092621ENST00000641811A0A286YF78
ENSG00000092621ENST00000641891A0A286YFB2
ENSG00000092621ENST00000641947A0A286YF22
ENSG00000092621ENST00000642041A0A286YER3

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90

Pathways

PathwaySourceExternal ID
Glycine, serine and threonine metabolismKEGGko00260
Glycine, serine and threonine metabolismKEGGhsa00260
Metabolic pathwaysKEGGhsa01100
Serine biosynthesis, glycerate-3P => serineKEGGhsa_M00020
Serine biosynthesis, glycerate-3P => serineKEGGM00020
Biosynthesis of amino acidsKEGGhsa01230
Biosynthesis of amino acidsKEGGko01230
Carbon metabolismKEGGhsa01200
Carbon metabolismKEGGko01200
MetabolismREACTOMER-HSA-1430728
Metabolism of amino acids and derivativesREACTOMER-HSA-71291
Amino acid synthesis and interconversion (transamination)REACTOMER-HSA-70614
Serine biosynthesisREACTOMER-HSA-977347

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
372498132024KDM4B down-regulation facilitated breast cancer cell stemness via PHGDH upregulation in H3K36me3-dependent manner.2
376505872024Biochemical and cellular studies of three human 3-phosphoglycerate dehydrogenase variants responsible for pathological reduced L-serine levels.2
379914542024Serine synthesis pathway enzyme PHGDH is critical for muscle cell biomass, anabolic metabolism, and mTORC1 signaling.1
383839642024PRMT1 Sustains De Novo Fatty Acid Synthesis by Methylating PHGDH to Drive Chemoresistance in Triple-Negative Breast Cancer.0
386542052024CircPHGDH downregulation decreases papillary thyroid cancer progression through miR-122-5p/PKM2 axis.0
372498132024KDM4B down-regulation facilitated breast cancer cell stemness via PHGDH upregulation in H3K36me3-dependent manner.2
376505872024Biochemical and cellular studies of three human 3-phosphoglycerate dehydrogenase variants responsible for pathological reduced L-serine levels.2
379914542024Serine synthesis pathway enzyme PHGDH is critical for muscle cell biomass, anabolic metabolism, and mTORC1 signaling.1
383839642024PRMT1 Sustains De Novo Fatty Acid Synthesis by Methylating PHGDH to Drive Chemoresistance in Triple-Negative Breast Cancer.0
386542052024CircPHGDH downregulation decreases papillary thyroid cancer progression through miR-122-5p/PKM2 axis.0
368031572023Comprehensive analysis of PHGDH for predicting prognosis and immunotherapy response in patients with endometrial carcinoma.1
368231882023PHGDH arginine methylation by PRMT1 promotes serine synthesis and represents a therapeutic vulnerability in hepatocellular carcinoma.14
369251952023The Role of ESRP1 in the Regulation of PHGDH in Estrogen Receptor-Positive Breast Cancer.1
371921602023PHGDH preserves one-carbon cycle to confer metabolic plasticity in chemoresistant gastric cancer during nutrient stress.7
368031572023Comprehensive analysis of PHGDH for predicting prognosis and immunotherapy response in patients with endometrial carcinoma.1

Citation

Dessen P

PHGDH (phosphoglycerate dehydrogenase)

Atlas Genet Cytogenet Oncol Haematol. 2011-10-01

Online version: http://atlasgeneticsoncology.org/gene/52399/phgdh-(phosphoglycerate-dehydrogenase)