TARBP1 (TAR (HIV-1) RNA binding protein 1)

2013-01-01  

Identity

HGNC
TARBP1
LOCATION
1q42.2
LOCUSID
6894
ALIAS
TRM3,TRMT3,TRP-185,TRP185
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 6894
MIM: 605052
HGNC: 11568
Ensembl: ENSG00000059588

Variants:

dbSNP: 6894
ClinVar: 6894
TCGA: ENSG00000059588
COSMIC: TARBP1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000059588ENST00000040877Q13395

Expression (GTEx)

0
10
20
30
40
50
60
70
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
331373422021DNA methylation associated with persistent ADHD suggests TARBP1 as novel candidate.9
331373422021DNA methylation associated with persistent ADHD suggests TARBP1 as novel candidate.9
264646512015Expression of protein TARBP1 in human hepatocellular carcinoma and its prognostic significance.7
264646512015Expression of protein TARBP1 in human hepatocellular carcinoma and its prognostic significance.7
254215112014Stress-related alcohol consumption in heavy drinkers correlates with expression of miR-10a, miR-21, and components of the TAR-RNA-binding protein-associated complex.20
254215112014Stress-related alcohol consumption in heavy drinkers correlates with expression of miR-10a, miR-21, and components of the TAR-RNA-binding protein-associated complex.20
220254532012Expression levels of the microRNA maturing microprocessor complex component DGCR8 and the RNA-induced silencing complex (RISC) components argonaute-1, argonaute-2, PACT, TARBP1, and TARBP2 in epithelial skin cancer.48
220254532012Expression levels of the microRNA maturing microprocessor complex component DGCR8 and the RNA-induced silencing complex (RISC) components argonaute-1, argonaute-2, PACT, TARBP1, and TARBP2 in epithelial skin cancer.48
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
194226932009Characterization of the TRBP domain required for dicer interaction and function in RNA interference.73
194226932009Characterization of the TRBP domain required for dicer interaction and function in RNA interference.73
184122632008Crystal structure of the methyltransferase domain of human TARBP1.9
184122632008Crystal structure of the methyltransferase domain of human TARBP1.9
124582222003Tat and trans-activation-responsive (TAR) RNA-independent induction of HIV-1 long terminal repeat by human and murine cyclin T1 requires Sp1.38

Citation

Dessen P

TARBP1 (TAR (HIV-1) RNA binding protein 1)

Atlas Genet Cytogenet Oncol Haematol. 2013-01-01

Online version: http://atlasgeneticsoncology.org/gene/53144/cancer-prone-explorer/hgnc