COLCA1 (colorectal cancer associated 1)

2013-09-01 Affiliation

Identity

HGNC

COLCA1

LOCATION

11q23.1

LOCUSID

399948

ALIAS

C11orf92,CASC12,LOH11CR1F

FUSION GENES

Show Gene Fusions

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 399948
MIM: 615693
HGNC: 33789
Ensembl: ENSG00000196167

Variants:

dbSNP: 399948
ClinVar: 399948
TCGA: ENSG00000196167
COSMIC: COLCA1

RNA/Proteins

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

References

Pubmed ID	Year	Title	Citations
19843678	2009	Enrichment of low penetrance susceptibility loci in a Dutch familial colorectal cancer cohort.	35
20530476	2010	Risk of genome-wide association study-identified genetic variants for colorectal cancer in a Chinese population.	34
20648012	2010	Association studies on 11 published colorectal cancer risk loci.	34
18753146	2008	Refinement of the basis and impact of common 11q23.1 variation to the risk of developing colorectal cancer.	32
20638935	2010	Susceptibility genetic variants associated with colorectal cancer risk correlate with cancer phenotype.	19
24154973	2014	Identification of genes expressed by immune cells of the colon that are regulated by colorectal cancer-associated variants.	15
24146276	2014	Genetic association of PLCE1, C11orf92-C11orf93, and NOC3L with colorectal cancer risk in the Han population.	11
20501757	2010	Low-penetrance susceptibility variants in familial colorectal cancer.	10

Citation

Dessen P

COLCA1 (colorectal cancer associated 1)

Atlas Genet Cytogenet Oncol Haematol. 2013-09-01

Online version: http://atlasgeneticsoncology.org/gene/53511/colca1-(colorectal-cancer-associated-1)