TRAPPC4 (trafficking protein particle complex subunit 4)

2014-05-01  

Identity

HGNC
LOCATION
11q23.3
LOCUSID
ALIAS
CGI-104,HSPC172,NEDESBA,PTD009,SBDN,SYNBINDIN,TRS23
FUSION GENES

Other Information

Locus ID:

NCBI: 51399
MIM: 610971
HGNC: 19943
Ensembl: ENSG00000196655

Variants:

dbSNP: 51399
ClinVar: 51399
TCGA: ENSG00000196655
COSMIC: TRAPPC4

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000196655ENST00000359005J3KP27
ENSG00000196655ENST00000434101Q9Y296
ENSG00000196655ENST00000525079G3V1A0
ENSG00000196655ENST00000525303E9PKS9
ENSG00000196655ENST00000528230E9PQE8
ENSG00000196655ENST00000533012G5EA23
ENSG00000196655ENST00000533058E9PN70
ENSG00000196655ENST00000533632Q9Y296

Expression (GTEx)

0
10
20
30
40
50
60
70
80

Pathways

PathwaySourceExternal ID
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
Asparagine N-linked glycosylationREACTOMER-HSA-446203
Transport to the Golgi and subsequent modificationREACTOMER-HSA-948021
ER to Golgi Anterograde TransportREACTOMER-HSA-199977
COPII (Coat Protein 2) Mediated Vesicle TransportREACTOMER-HSA-204005
Vesicle-mediated transportREACTOMER-HSA-5653656
Membrane TraffickingREACTOMER-HSA-199991
Extracellular matrix organizationREACTOMER-HSA-1474244
Non-integrin membrane-ECM interactionsREACTOMER-HSA-3000171
Syndecan interactionsREACTOMER-HSA-3000170
RAB GEFs exchange GTP for GDP on RABsREACTOMER-HSA-8876198

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
329011382021A relatively common homozygous TRAPPC4 splicing variant is associated with an early-infantile neurodegenerative syndrome.6
345185382021TRAPPC4 regulates the intracellular trafficking of PD-L1 and antitumor immunity.23
329011382021A relatively common homozygous TRAPPC4 splicing variant is associated with an early-infantile neurodegenerative syndrome.6
345185382021TRAPPC4 regulates the intracellular trafficking of PD-L1 and antitumor immunity.23
317940242020Deficiencies in vesicular transport mediated by TRAPPC4 are associated with severe syndromic intellectual disability.19
317940242020Deficiencies in vesicular transport mediated by TRAPPC4 are associated with severe syndromic intellectual disability.19
305610332019Synbindin deficiency inhibits colon carcinogenesis by attenuating Wnt cascade and balancing gut microbiome.6
305610332019Synbindin deficiency inhibits colon carcinogenesis by attenuating Wnt cascade and balancing gut microbiome.6
236256502014The role of ERK2 in colorectal carcinogenesis is partly regulated by TRAPPC4.7
236256502014The role of ERK2 in colorectal carcinogenesis is partly regulated by TRAPPC4.7
241046082013Synbindin in extracellular signal-regulated protein kinase spatial regulation and gastric cancer aggressiveness.18
241046082013Synbindin in extracellular signal-regulated protein kinase spatial regulation and gastric cancer aggressiveness.18
218262442011TRAPPC4-ERK2 interaction activates ERK1/2, modulates its nuclear localization and regulates proliferation and apoptosis of colorectal cancer cells.13
218262442011TRAPPC4-ERK2 interaction activates ERK1/2, modulates its nuclear localization and regulates proliferation and apoptosis of colorectal cancer cells.13
184667582009Crystal structure of human synbindin reveals two conformations of longin domain.5

Citation

Dessen P

TRAPPC4 (trafficking protein particle complex subunit 4)

Atlas Genet Cytogenet Oncol Haematol. 2014-05-01

Online version: http://atlasgeneticsoncology.org/gene/53909/trappc4-(trafficking-protein-particle-complex-subunit-4)