LRCH3 (leucine rich repeats and calponin homology domain containing 3)

2014-08-01  

Identity

HGNC
LRCH3
LOCATION
3q29
LOCUSID
84859
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 84859
HGNC: 28637
Ensembl: ENSG00000186001

Variants:

dbSNP: 84859
ClinVar: 84859
TCGA: ENSG00000186001
COSMIC: LRCH3

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000186001ENST00000334859Q96II8
ENSG00000186001ENST00000414675Q96II8
ENSG00000186001ENST00000425562Q96II8
ENSG00000186001ENST00000428136Q96II8
ENSG00000186001ENST00000433298H7C1G3
ENSG00000186001ENST00000438796Q96II8
ENSG00000186001ENST00000441090E9PD99
ENSG00000186001ENST00000443727F8WFB5
ENSG00000186001ENST00000452660H7C0J8

Expression (GTEx)

0
5
10
15
20
25
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

Citation

Dessen P

LRCH3 (leucine rich repeats and calponin homology domain containing 3)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54429/lrch3-(leucine-rich-repeats-and-calponin-homology-domain-containing-3)