PCDHGA1 (protocadherin gamma subfamily A, 1)

2014-08-01  

Identity

HGNC
PCDHGA1
LOCATION
5q31.3
LOCUSID
56114
ALIAS
PCDH-GAMMA-A1
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 56114
MIM: 606288
HGNC: 8696
Ensembl: ENSG00000204956

Variants:

dbSNP: 56114
ClinVar: 56114
TCGA: ENSG00000204956
COSMIC: PCDHGA1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000204956ENST00000378105Q9Y5H4
ENSG00000204956ENST00000517417Q9Y5H4

Expression (GTEx)

0
1
2
3
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78

Citation

Dessen P

PCDHGA1 (protocadherin gamma subfamily A, 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54530/pcdhga1-(protocadherin-gamma-subfamily-a-1)