SCAF11 (SR-related CTD associated factor 11)

2014-08-01  

Identity

HGNC
SCAF11
LOCATION
12q12
LOCUSID
9169
ALIAS
CASP11,SFRS2IP,SIP1,SRRP129,SRSF2IP
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 9169
MIM: 603668
HGNC: 10784
Ensembl: ENSG00000139218

Variants:

dbSNP: 9169
ClinVar: 9169
TCGA: ENSG00000139218
COSMIC: SCAF11

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000139218ENST00000266589F8W6K1
ENSG00000139218ENST00000369367Q99590
ENSG00000139218ENST00000395453A8MTP4
ENSG00000139218ENST00000395454A8MUK0
ENSG00000139218ENST00000465950Q99590
ENSG00000139218ENST00000547018A0A0A0MTP7
ENSG00000139218ENST00000549162F8VXG7
ENSG00000139218ENST00000550893A0A087WTB7
ENSG00000139218ENST00000551391A0A087WUE7

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
367630102023CASP4/11 Contributes to NLRP3 Activation and COVID-19 Exacerbation.3
367630102023CASP4/11 Contributes to NLRP3 Activation and COVID-19 Exacerbation.3
335461732021Regulation, Activation and Function of Caspase-11 during Health and Disease.27
335461732021Regulation, Activation and Function of Caspase-11 during Health and Disease.27
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
166113722006Identification and characterization of the carboxy-terminal region of Sip-1, a novel autoantigen in Behçet's disease.10
166113722006Identification and characterization of the carboxy-terminal region of Sip-1, a novel autoantigen in Behçet's disease.10

Citation

Dessen P

SCAF11 (SR-related CTD associated factor 11)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54601/gene-fusions-explorer/submit-meetings/welcome