TNRC18 (trinucleotide repeat containing 18)

2014-08-01  

Identity

HGNC
TNRC18
LOCATION
7p22.1
LOCUSID
84629
ALIAS
CAGL79,TNRC18A
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 84629
HGNC: 11962
Ensembl: ENSG00000182095

Variants:

dbSNP: 84629
ClinVar: 84629
TCGA: ENSG00000182095
COSMIC: TNRC18

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000182095ENST00000328270H7BXS9
ENSG00000182095ENST00000399434A8MTZ4
ENSG00000182095ENST00000399537H9KVB4
ENSG00000182095ENST00000413081H7C3U5
ENSG00000182095ENST00000430969O15417
ENSG00000182095ENST00000434361C9J9K1
ENSG00000182095ENST00000440081H7C0N9
ENSG00000182095ENST00000455076H7C177

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
325355942020Disruption of PCDH10 and TNRC18 Genes due to a Balanced Translocation.1
325355942020Disruption of PCDH10 and TNRC18 Genes due to a Balanced Translocation.1

Citation

Dessen P

TNRC18 (trinucleotide repeat containing 18)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54717/gene-fusions/case-report-explorer/