SMN1 (survival of motor neuron 1, telomeric)

2014-10-01  

Identity

HGNC
LOCATION
5q13.2
LOCUSID
ALIAS
BCD541,GEMIN1,SMA,SMA1,SMA2,SMA3,SMA4,SMA@,SMN,SMNT,T-BCD541,TDRD16A

Other Information

Locus ID:

NCBI: 6606
MIM: 600354
HGNC: 11117
Ensembl: ENSG00000172062

Variants:

dbSNP: 6606
ClinVar: 6606
TCGA: ENSG00000172062
COSMIC: SMN1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000172062ENST00000351205Q16637
ENSG00000172062ENST00000380707Q16637
ENSG00000172062ENST00000503079Q16637
ENSG00000172062ENST00000506163Q16637
ENSG00000172062ENST00000506239E7EQZ4
ENSG00000172062ENST00000507905H0YBZ9
ENSG00000172062ENST00000514951B4DP61
ENSG00000172062ENST00000625245E7EQZ4

Expression (GTEx)

0
1
2
3
4
5
6
7
8
9

Pathways

PathwaySourceExternal ID
RNA transportKEGGko03013
RNA transportKEGGhsa03013
Survival motor neuron (SMN) complexKEGGhsa_M00426
Survival motor neuron (SMN) complexKEGGM00426
Gene ExpressionREACTOMER-HSA-74160
Metabolism of non-coding RNAREACTOMER-HSA-194441
snRNP AssemblyREACTOMER-HSA-191859

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
385209932024Rare homozygous disease-associated sequence variants in children with spinal muscular atrophy: a phenotypic description and review of the literature.0
385209932024Rare homozygous disease-associated sequence variants in children with spinal muscular atrophy: a phenotypic description and review of the literature.0
363758402023SMA-linked SMN mutants prevent phase separation properties and SMN interactions with FMRP family members.4
366041492023SMN promotes mitochondrial metabolic maturation during myogenesis by regulating the MYOD-miRNA axis.7
366753082023The RNA-Binding Protein SMN as a Novel Player in Laryngeal Squamous Cell Carcinoma.4
367692462023SMN Deficiency Destabilizes ABCA1 Expression in Human Fibroblasts: Novel Insights in Pathophysiology of Spinal Muscular Atrophy.0
369731142023Newborn screening for spinal muscular atrophy in Osaka -challenges in a Japanese pilot study.5
370388232023Full-Length SMN Transcript in Extracellular Vesicles as Biomarker in Individuals with Spinal Muscular Atrophy Type 2 Treated with Nusinersen.3
373698052023SMN regulates GEMIN5 expression and acts as a modifier of GEMIN5-mediated neurodegeneration.2
375103072023The Carrier Frequency of Two SMN1 Genes in Parents of Symptomatic Children with SMA and the Significance of SMN1 Exon 8 in Carriers.0
377506222023Deletions of SMNI gene exon 7 and NAIP gene exon 5 in spinal muscular atrophy patients in selected population.1
378782912023SMN haploinsufficiency promotes ischemia/ reperfusion-induced AKI-to-CKD transition by endoplasmic reticulum stress activation.0
379061472023[Analysis of a Chinese pedigree affected with Spinal muscular atrophy due to compound heterozygous variants of SMN gene].0
379573442023SMN deficiency perturbs monoamine neurotransmitter metabolism in spinal muscular atrophy.2
363758402023SMA-linked SMN mutants prevent phase separation properties and SMN interactions with FMRP family members.4

Citation

Dessen P

SMN1 (survival of motor neuron 1, telomeric)

Atlas Genet Cytogenet Oncol Haematol. 2014-10-01

Online version: http://atlasgeneticsoncology.org/gene/54929/teaching-explorer/meetings/