SLCO6A1 (solute carrier organic anion transporter family member 6A1)

2015-03-01  

Identity

HGNC
SLCO6A1
LOCATION
5q21.1
LOCUSID
133482
ALIAS
CT48,GST,OATP-I,OATP6A1,OATPY
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 133482
MIM: 613365
HGNC: 23613
Ensembl: ENSG00000205359

Variants:

dbSNP: 133482
ClinVar: 133482
TCGA: ENSG00000205359
COSMIC: SLCO6A1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000205359ENST00000379807Q86UG4
ENSG00000205359ENST00000379807A0A140VJU7
ENSG00000205359ENST00000389019Q86UG4
ENSG00000205359ENST00000506729Q86UG4
ENSG00000205359ENST00000506729A0A140VJU7
ENSG00000205359ENST00000511588H0Y8R6
ENSG00000205359ENST00000513675C9J020

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
268617272016Analysis of association between common variants in the SLCO6A1 gene with schizophrenia, bipolar disorder and major depressive disorder in the Han Chinese population.1
268617272016Analysis of association between common variants in the SLCO6A1 gene with schizophrenia, bipolar disorder and major depressive disorder in the Han Chinese population.1
253014522015Specific expression of OATPs in primary small cell lung cancer (SCLC) cells as novel biomarkers for diagnosis and therapy.11
253014522015Specific expression of OATPs in primary small cell lung cancer (SCLC) cells as novel biomarkers for diagnosis and therapy.11
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
193975312009Genetic polymorphisms in Thai neonates with hyperbilirubinemia.10
193975312009Genetic polymorphisms in Thai neonates with hyperbilirubinemia.10

Citation

Dessen P

SLCO6A1 (solute carrier organic anion transporter family member 6A1)

Atlas Genet Cytogenet Oncol Haematol. 2015-03-01

Online version: http://atlasgeneticsoncology.org/gene/55146/tumors-explorer/teaching-explorer/