ABCA10 (ATP binding cassette subfamily A member 10)

2015-08-01  

Identity

HGNC
ABCA10
LOCATION
17q24.3
LOCUSID
10349
ALIAS
EST698739
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 10349
MIM: 612508
HGNC: 30
Ensembl: ENSG00000154263

Variants:

dbSNP: 10349
ClinVar: 10349
TCGA: ENSG00000154263
COSMIC: ABCA10

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000154263ENST00000269081Q8WWZ4
ENSG00000154263ENST00000518929E5RFP5
ENSG00000154263ENST00000521538K7EMH5
ENSG00000154263ENST00000522406Q8WWZ4
ENSG00000154263ENST00000522787K7ERP5
ENSG00000154263ENST00000523419E5RFN6
ENSG00000154263ENST00000523512Q8WWZ4
ENSG00000154263ENST00000524273H0YBL8

Expression (GTEx)

0
10
20
30
40
50
60
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
ABC transportersKEGGko02010
ABC transportersKEGGhsa02010
Transmembrane transport of small moleculesREACTOMER-HSA-382551
ABC-family proteins mediated transportREACTOMER-HSA-382556
ABC transporters in lipid homeostasisREACTOMER-HSA-1369062

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
128211552003ABCA10, a novel cholesterol-regulated ABCA6-like ABC transporter.9
252941552014A comprehensive evaluation of the role of genetic variation in follicular lymphoma survival.4

Citation

Dessen P

ABCA10 (ATP binding cassette subfamily A member 10)

Atlas Genet Cytogenet Oncol Haematol. 2015-08-01

Online version: http://atlasgeneticsoncology.org/gene/55371/abca10-(atp-binding-cassette-subfamily-a-member-10)