COL19A1 (collagen type XIX alpha 1 chain)

2018-02-01 Affiliation

Identity

HGNC

COL19A1

LOCATION

6q13

LOCUSID

1310

ALIAS

COL9A1L,D6S228E

FUSION GENES

Show Gene Fusions

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 1310
MIM: 120165
HGNC: 2196
Ensembl: ENSG00000082293

Variants:

dbSNP: 1310
ClinVar: 1310
TCGA: ENSG00000082293
COSMIC: COL19A1

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000082293	ENST00000455415	Q5JVU1
ENSG00000082293	ENST00000478620	A0A087WVJ7
ENSG00000082293	ENST00000620364	Q14993

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Pathways

Pathway	Source	External ID
Extracellular matrix organization	REACTOME	R-HSA-1474244
Collagen formation	REACTOME	R-HSA-1474290
Collagen biosynthesis and modifying enzymes	REACTOME	R-HSA-1650814
Degradation of the extracellular matrix	REACTOME	R-HSA-1474228
Collagen degradation	REACTOME	R-HSA-1442490
Collagen chain trimerization	REACTOME	R-HSA-8948216

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
20379614	2010	Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.	62
18845531	2008	Trimerization and triple helix stabilization of the collagen XIX NC2 domain.	16
15383545	2004	The fibril-associated collagen IX provides a novel mechanism for cell adhesion to cartilaginous matrix.	10
27491275	2017	Type XIX collagen: A new partner in the interactions between tumor cells and their microenvironment.	7
29376320	2018	Unique Conformation in a Natural Interruption Sequence of Type XIX Collagen Revealed by Its High-Resolution Crystal Structure.	1

Citation

Dessen P

COL19A1 (collagen type XIX alpha 1 chain)

Atlas Genet Cytogenet Oncol Haematol. 2018-02-01

Online version: http://atlasgeneticsoncology.org/gene/57362/col19a1-(collagen-type-xix-alpha-1-chain)