NIP7 (nucleolar pre-rRNA processing protein NIP7)

2019-04-01  

Identity

HGNC
NIP7
LOCATION
16q22.1
LOCUSID
51388
ALIAS
CGI-37,HSPC031,KD93
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 51388
HGNC: 24328
Ensembl: ENSG00000132603

Variants:

dbSNP: 51388
ClinVar: 51388
TCGA: ENSG00000132603
COSMIC: NIP7

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000132603ENST00000254940Q9Y221
ENSG00000132603ENST00000254941Q9Y221
ENSG00000132603ENST00000562523J3QRD6
ENSG00000132603ENST00000567202J3QRR4
ENSG00000132603ENST00000569637J3QLW7

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
303172462018Comprehensive Bioinformatic Analysis Genes Associated to the Prognosis of Liposarcoma.5
303172462018Comprehensive Bioinformatic Analysis Genes Associated to the Prognosis of Liposarcoma.5
207981762011The NIP7 protein is required for accurate pre-rRNA processing in human cells.18
221950172011The human nucleolar protein FTSJ3 associates with NIP7 and functions in pre-rRNA processing.25
207981762011The NIP7 protein is required for accurate pre-rRNA processing in human cells.18
221950172011The human nucleolar protein FTSJ3 associates with NIP7 and functions in pre-rRNA processing.25
176434192007The Shwachman-Bodian-Diamond syndrome associated protein interacts with HsNip7 and its down-regulation affects gene expression at the transcriptional and translational levels.16
176434192007The Shwachman-Bodian-Diamond syndrome associated protein interacts with HsNip7 and its down-regulation affects gene expression at the transcriptional and translational levels.16
155227842004Crystal structure of KD93, a novel protein expressed in human hematopoietic stem/progenitor cells.0
155227842004Crystal structure of KD93, a novel protein expressed in human hematopoietic stem/progenitor cells.0

Citation

Dessen P

NIP7 (nucleolar pre-rRNA processing protein NIP7)

Atlas Genet Cytogenet Oncol Haematol. 2019-04-01

Online version: http://atlasgeneticsoncology.org/gene/57879/nip7-(nucleolar-pre-rrna-processing-protein-nip7)