C11orf54 (chromosome 11 open reading frame 54)

2014-11-01  

Identity

HGNC
C11orf54
LOCATION
11q21
LOCUSID
28970
ALIAS
PTD012,PTOD012
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 28970
MIM: 615810
HGNC: 30204
Ensembl: ENSG00000182919

Variants:

dbSNP: 28970
ClinVar: 28970
TCGA: ENSG00000182919
COSMIC: C11orf54

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000182919ENST00000331239Q9H0W9
ENSG00000182919ENST00000331239A0A024R396
ENSG00000182919ENST00000354421Q9H0W9
ENSG00000182919ENST00000354421A0A024R396
ENSG00000182919ENST00000526335E9PLB3
ENSG00000182919ENST00000527003E9PR95
ENSG00000182919ENST00000527363E9PIP1
ENSG00000182919ENST00000528099Q9H0W9
ENSG00000182919ENST00000528099A0A024R396
ENSG00000182919ENST00000528288Q9H0W9
ENSG00000182919ENST00000528288A0A024R3B0
ENSG00000182919ENST00000530279E9PSC3
ENSG00000182919ENST00000530620E9PQS1
ENSG00000182919ENST00000531650E9PPB5
ENSG00000182919ENST00000533154E9PJU8
ENSG00000182919ENST00000533585E9PLC5
ENSG00000182919ENST00000540113Q9H0W9
ENSG00000182919ENST00000617482A0A087WT99

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
372774412023C11orf54 promotes DNA repair via blocking CMA-mediated degradation of HIF1A.1
372774412023C11orf54 promotes DNA repair via blocking CMA-mediated degradation of HIF1A.1

Citation

Dessen P

C11orf54 (chromosome 11 open reading frame 54)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/60888/c11orf54-(chromosome-11-open-reading-frame-54)