GPBP1 (GC-rich promoter binding protein 1)

2014-11-01  

Identity

HGNC
GPBP1
LOCATION
5q11.2
LOCUSID
65056
ALIAS
GPBP,SSH6,VASCULIN
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 65056
MIM: 608412
HGNC: 29520
Ensembl: ENSG00000062194

Variants:

dbSNP: 65056
ClinVar: 65056
TCGA: ENSG00000062194
COSMIC: GPBP1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000062194ENST00000264779Q86WP2
ENSG00000062194ENST00000424459D4PHA4
ENSG00000062194ENST00000506184Q86WP2
ENSG00000062194ENST00000511209Q86WP2
ENSG00000062194ENST00000514387Q86WP2

Expression (GTEx)

0
50
100
150
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
176729182007Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns.20
176729182007Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns.20
128429932003Vasculin, a novel vascular protein differentially expressed in human atherogenesis.3
128429932003Vasculin, a novel vascular protein differentially expressed in human atherogenesis.3
112566142000Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing.126
112566142000Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing.126

Citation

Dessen P

GPBP1 (GC-rich promoter binding protein 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/63927/gpbp1-(gc-rich-promoter-binding-protein-1)