LRRC49 (leucine rich repeat containing 49)

2014-11-01  

Identity

HGNC
LRRC49
LOCATION
15q23
LOCUSID
54839
ALIAS
PGs4
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 54839
HGNC: 25965
Ensembl: ENSG00000137821

Variants:

dbSNP: 54839
ClinVar: 54839
TCGA: ENSG00000137821
COSMIC: LRRC49

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000137821ENST00000260382Q8IUZ0
ENSG00000137821ENST00000443425Q8IUZ0
ENSG00000137821ENST00000544974Q8IUZ0
ENSG00000137821ENST00000557977H3BNA9
ENSG00000137821ENST00000558032H0YM43
ENSG00000137821ENST00000558204H0YM43
ENSG00000137821ENST00000558456H0YNI5
ENSG00000137821ENST00000558546H0YKS7
ENSG00000137821ENST00000558808H0YKI5
ENSG00000137821ENST00000559069H0YLZ6
ENSG00000137821ENST00000559201H0YM43
ENSG00000137821ENST00000559670H0YMT2
ENSG00000137821ENST00000559806H0YLQ8
ENSG00000137821ENST00000560107H0YMZ6
ENSG00000137821ENST00000560158H0YKE9
ENSG00000137821ENST00000560369Q8IUZ0
ENSG00000137821ENST00000560691H0YNV5
ENSG00000137821ENST00000560755H0YKQ0
ENSG00000137821ENST00000561081A0A0B4J283

Expression (GTEx)

0
5
10
15
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
185757472008Silencing of LRRC49 and THAP10 genes by bidirectional promoter hypermethylation is a frequent event in breast cancer.14
185757472008Silencing of LRRC49 and THAP10 genes by bidirectional promoter hypermethylation is a frequent event in breast cancer.14

Citation

Dessen P

LRRC49 (leucine rich repeat containing 49)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/68633/lrrc49-(leucine-rich-repeat-containing-49)