LYPD6B (LY6/PLAUR domain containing 6B)

2014-11-01  

Identity

HGNC
LYPD6B
LOCATION
2q23.2
LOCUSID
130576
ALIAS
CT116,LYPD7
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 130576
HGNC: 27018
Ensembl: ENSG00000150556

Variants:

dbSNP: 130576
ClinVar: 130576
TCGA: ENSG00000150556
COSMIC: LYPD6B

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000150556ENST00000280115H7BXI7
ENSG00000150556ENST00000409029Q8NI32
ENSG00000150556ENST00000409642Q8NI32
ENSG00000150556ENST00000409876Q8NI32
ENSG00000150556ENST00000437627F8WEI1
ENSG00000150556ENST00000442722F8WB42
ENSG00000150556ENST00000450639F8WCH4

Expression (GTEx)

0
10
20
30
40
50
60
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
Post-translational modification: synthesis of GPI-anchored proteinsREACTOMER-HSA-163125

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
330197702020Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.10
330197702020Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.10
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
183607922009Cloning and characterization of a human LYPD7, a new member of the Ly-6 superfamily.8
183607922009Cloning and characterization of a human LYPD7, a new member of the Ly-6 superfamily.8

Citation

Dessen P

LYPD6B (LY6/PLAUR domain containing 6B)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/68721/lypd6b-(ly6-plaur-domain-containing-6b)