RPL17 (ribosomal protein L17)

2014-11-01 Affiliation

Identity

HGNC

RPL17

LOCATION

18q21.1

LOCUSID

6139

ALIAS

L17,PD-1,RPL23

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 6139
MIM: 603661
HGNC: 10307
Ensembl: ENSG00000265681

Variants:

dbSNP: 6139
ClinVar: 6139
TCGA: ENSG00000265681
COSMIC: RPL17

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000265681	ENST00000578528	J3KSJ0
ENSG00000265681	ENST00000578532	J3QQT2
ENSG00000265681	ENST00000579248	P18621
ENSG00000265681	ENST00000579248	A0A024R261
ENSG00000265681	ENST00000579408	P18621
ENSG00000265681	ENST00000579408	A0A024R261
ENSG00000265681	ENST00000580210	J3QLC8
ENSG00000265681	ENST00000580261	P18621
ENSG00000265681	ENST00000580261	A0A024R261
ENSG00000265681	ENST00000580387	J3KRB3
ENSG00000265681	ENST00000581373	P18621
ENSG00000265681	ENST00000583036	J3QS96
ENSG00000265681	ENST00000583637	J3KRX5
ENSG00000265681	ENST00000615479	A0A087WY81
ENSG00000265681	ENST00000615760	A0A087WWH0
ENSG00000265681	ENST00000617346	A0A087WXM6
ENSG00000265681	ENST00000618613	P18621
ENSG00000265681	ENST00000618613	A0A024R261
ENSG00000265681	ENST00000618619	P18621
ENSG00000265681	ENST00000618619	A0A024R261

Expression (GTEx)

500

1000

1500

2000

2500

3000

3500

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Pathways

Pathway	Source	External ID
Ribosome	KEGG	ko03010
Ribosome	KEGG	hsa03010
Ribosome, eukaryotes	KEGG	hsa_M00177
Ribosome, eukaryotes	KEGG	M00177
Metabolism of proteins	REACTOME	R-HSA-392499
Translation	REACTOME	R-HSA-72766
Eukaryotic Translation Initiation	REACTOME	R-HSA-72613
Cap-dependent Translation Initiation	REACTOME	R-HSA-72737
Formation of a pool of free 40S subunits	REACTOME	R-HSA-72689
GTP hydrolysis and joining of the 60S ribosomal subunit	REACTOME	R-HSA-72706
L13a-mediated translational silencing of Ceruloplasmin expression	REACTOME	R-HSA-156827
SRP-dependent cotranslational protein targeting to membrane	REACTOME	R-HSA-1799339
Eukaryotic Translation Elongation	REACTOME	R-HSA-156842
Peptide chain elongation	REACTOME	R-HSA-156902
Eukaryotic Translation Termination	REACTOME	R-HSA-72764
Disease	REACTOME	R-HSA-1643685
Infectious disease	REACTOME	R-HSA-5663205
Influenza Infection	REACTOME	R-HSA-168254
Influenza Life Cycle	REACTOME	R-HSA-168255
Influenza Viral RNA Transcription and Replication	REACTOME	R-HSA-168273
Viral mRNA Translation	REACTOME	R-HSA-192823
Gene Expression	REACTOME	R-HSA-74160
Nonsense-Mediated Decay (NMD)	REACTOME	R-HSA-927802
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)	REACTOME	R-HSA-975957
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)	REACTOME	R-HSA-975956
Metabolism	REACTOME	R-HSA-1430728
Metabolism of amino acids and derivatives	REACTOME	R-HSA-71291
Selenoamino acid metabolism	REACTOME	R-HSA-2408522
Selenocysteine synthesis	REACTOME	R-HSA-2408557
rRNA processing	REACTOME	R-HSA-72312
Major pathway of rRNA processing in the nucleolus and cytosol	REACTOME	R-HSA-6791226
rRNA processing in the nucleus and cytosol	REACTOME	R-HSA-8868773

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
30103068	2018	Integrated profiling of phenotype and blood transcriptome for stress vulnerability and depression.	14
30103068	2018	Integrated profiling of phenotype and blood transcriptome for stress vulnerability and depression.	14

Citation

Dessen P

RPL17 (ribosomal protein L17)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/72797/rpl17-(ribosomal-protein-l17)

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